View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3110_low_10 (Length: 242)
Name: NF3110_low_10
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3110_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 8285619 - 8285843
Alignment:
| Q |
18 |
cttaaccatgaagatgtaaaagaagagtaacggttttctggatttggttgttcatcatcgttatctgtagctatcaaatgccttggacttgaaaatggtg |
117 |
Q |
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| T |
8285619 |
cttaaccatgaagatgtaaaagaagagtaacggttttctggatttggttgttcatcatcattatctgtagctatcaaatgccttggacttgaaaatggtg |
8285718 |
T |
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| Q |
118 |
tatagaatttctcaacaggttgtagctcaacgaactttgtgaacgtgatcaccacccttactgtagggaccaccgggattgctacctgccccaccatatc |
217 |
Q |
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| T |
8285719 |
tatagaatttctcaacaggttgtagctcaacgaactttgtgaacgtgatcaccacccttactgtagggaccaccgggattgctacctgccccaccatatc |
8285818 |
T |
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| Q |
218 |
acaaatatcaataacacaatatttc |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
8285819 |
acaaatatcaataacacaatatttc |
8285843 |
T |
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