View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3110_low_11 (Length: 238)

Name: NF3110_low_11
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3110_low_11
NF3110_low_11
[»] chr8 (5 HSPs)
chr8 (61-238)||(44903915-44904092)
chr8 (110-238)||(44898146-44898267)
chr8 (61-104)||(44917387-44917430)
chr8 (17-53)||(44903820-44903856)
chr8 (17-53)||(44917292-44917328)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 44903915 - 44904092
Alignment:
Q  61 tggtcttgaatggatctttttatgtgaaacaggtgataccaaagattataacaattatatgctcaaagaaatagatttaaaatccaatatcaaattgtat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44903915 tggtcttgaatggatctttttatgtgaaacaggtgataccaaagattataacaattatatggtcaaagaaatagatttaaaatccaatatcaaattgtat 44904014  T
Q  161 tgagtatcgactctacatgtgaatgttcagagcttaaaaaggttacgaatgaagtgaaccttttctgcaccatctctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904015 tgagtatcgactctacatgtgaatgttcagagcttaaaaaggttacgaatgaagtgaaccttttctgcaccatctctt 44904092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 44898267 - 44898146
Alignment:
Q  110 aacaattatatgctcaaagaaatagatttaaaatccaatatcaaattgtattgagtatcgactctacatgtgaatgttcagagcttaaaaaggttacgaa 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||| |||||| |||||| |||    
T  44898267 aacaattatatgctcgaagaaatagatttaaaatccaatatcaaattgtattga-------ctctacatgtgaatgttaagaacttaaagaggttatgaa 44898175  T
Q  210 tgaagtgaaccttttctgcaccatctctt 238  Q
    |||||||||||||||||||| ||||||||    
T  44898174 tgaagtgaaccttttctgcagcatctctt 44898146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 44917387 - 44917430
Alignment:
Q  61 tggtcttgaatggatctttttatgtgaaacaggtgataccaaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44917387 tggtcttgaatggatctttttatgtgaaacaggtgataccaaag 44917430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 44903820 - 44903856
Alignment:
Q  17 aagacgaatgcaccagcatcttctcttggtatagcat 53  Q
    |||||||||| ||||||||||||||||||||||||||    
T  44903820 aagacgaatgtaccagcatcttctcttggtatagcat 44903856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 44917292 - 44917328
Alignment:
Q  17 aagacgaatgcaccagcatcttctcttggtatagcat 53  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44917292 aagacaaatgcaccagcatcttctcttggtatagcat 44917328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University