View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3110_low_12 (Length: 220)
Name: NF3110_low_12
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3110_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 38568522 - 38568708
Alignment:
| Q |
34 |
ttatactcaaacacatgggttagatttcaaggaaacaagtgctcctg---------------ccataaaagttgtccttaccattgcccttgcctctgga |
118 |
Q |
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| T |
38568522 |
ttatactcaaacacatgggttagatttcaaggaaacaagtgctcctgtcgttaaacctcaaaccataaaagttgtccttaccattgcccttgcctctgga |
38568621 |
T |
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| Q |
119 |
tggtctttccatcaactagatgtcaataatgtcttcttgcaaggttaaataagtgaagaggtttacatgcaacaaccacctggtttt |
205 |
Q |
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| T |
38568622 |
tggtctttccatcaactagatgtcaataatgtcttcttgcaaggttaaataagtgaagaggtttacatgcaacaaccatctggtttt |
38568708 |
T |
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