View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3110_low_2 (Length: 440)
Name: NF3110_low_2
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3110_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 38892588 - 38892148
Alignment:
| Q |
1 |
caagtgaaaagtgagatttcaaattgttggatttaagtttgagtgattagttctacatcaattatgaatagacaaaacgttgaatatatatgagatgtga |
100 |
Q |
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| T |
38892588 |
caagtgaaaagtgagatttcaaattgttgggattaagtttgagtgattaattctacatcaattatgaatagacaaaacgttgaatatatatgagatgtga |
38892489 |
T |
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| Q |
101 |
catatatacat-aatgttttaaggtttttagcgaagatatgatgtctccatcgcttataatcataggtaattggtttgttgttgctttcagtgctccttc |
199 |
Q |
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| T |
38892488 |
catatacacattaatgttttaaggttttgagcgaagatatgatgtctccatcgcttataatcataggtaattggttcgctgttgctttccgtgctccttc |
38892389 |
T |
|
| Q |
200 |
agaccacccaacaactaatataagagcttttggtttggaagtgttgttttggaaggttctagcttggaaagacttggtacttagacaagtccattgtgac |
299 |
Q |
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| T |
38892388 |
agaccacccaacaactaatataagagcttttggtttggaagtgttgttttggaaggttctagctaggaaagacttggtacttagacgagtccattgtgac |
38892289 |
T |
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| Q |
300 |
ttgacctctctttattgggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagtttcgttgtgaagtttggacgagagagaattga |
399 |
Q |
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| T |
38892288 |
ttgacctctctttattaggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagttccgttgtgaagtttggacgagagagaattga |
38892189 |
T |
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| Q |
400 |
tggaagaatcattttttggcttgtggaaaattcaagttaac |
440 |
Q |
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| T |
38892188 |
tggaagaatcattttttggcttgtggaaaattcaagttaac |
38892148 |
T |
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