View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3110_low_4 (Length: 405)
Name: NF3110_low_4
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3110_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 384
Target Start/End: Complemental strand, 8286302 - 8286026
Alignment:
| Q |
96 |
tttgaaatattgttaacgccgatttattggttactagataatttattatttcttcnnnnnnnnnngataatttattatttggaaactgcttaaac----c |
191 |
Q |
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| T |
8286302 |
tttgaaatattgttaatgccgatttattggttactagataatttattagtt-----------------aagttattatttggaaactgcttaaacaagcc |
8286220 |
T |
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| Q |
192 |
ataagaattgtaagttttgtactcaatatttgttttgggattgtacaaaaatttttt-gtttccgtaggatgttaactaatgcccttaaaatgttatttg |
290 |
Q |
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| T |
8286219 |
atatgaattttaagatttgtactcaatatttgttttgggattgtacaaatttttttttgtttatgtaacatgttaacaaatgctcttaagatattatttg |
8286120 |
T |
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| Q |
291 |
aacaatttaaaccggtaatttttgcataaaatattgagtaattagtacttttatatgtgtttaatttgtatttttgagacaattcataccatga |
384 |
Q |
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| T |
8286119 |
aacaatttaaaccggtaatttttgcataaaatattgagtaactagtacttttacatgtgtttaatgtgtatttttgagacaattcataccatga |
8286026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 8286351 - 8286298
Alignment:
| Q |
15 |
tataagttaatgtcattatagtctatgcaaatatcatcggagggacggatttga |
68 |
Q |
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| T |
8286351 |
tataagttaatgtcattatagtctatgcaaatatcatcggagggacggatttga |
8286298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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