View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3110_low_9 (Length: 256)

Name: NF3110_low_9
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3110_low_9
NF3110_low_9
[»] chr8 (2 HSPs)
chr8 (19-190)||(6348454-6348625)
chr8 (187-219)||(28249845-28249877)
[»] chr2 (2 HSPs)
chr2 (183-216)||(5935260-5935293)
chr2 (185-216)||(34951111-34951142)
[»] chr3 (2 HSPs)
chr3 (185-227)||(8735025-8735067)
chr3 (185-227)||(9087266-9087308)
[»] chr7 (1 HSPs)
chr7 (190-227)||(114376-114413)
[»] chr6 (2 HSPs)
chr6 (190-227)||(2539439-2539476)
chr6 (190-219)||(31721916-31721945)
[»] chr1 (2 HSPs)
chr1 (190-227)||(12523163-12523200)
chr1 (183-216)||(49852816-49852849)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 6348625 - 6348454
Alignment:
Q  19 acattgtcatgctttaatttgcctttacgagtcaaagttcgtttgccacttcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6348625 acattgtcatgctttaatttgcctttacgagtcaaagttcgtttgccacttcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatg 6348526  T
Q  119 acaagattaagaaaattatcggttgtaaaaatagagaataatcattggcaaagctctctgactattgagttt 190  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  6348525 acaagattaagaaaattatcgggtgtaaaactagagaataatcattggcaaagctctctgactattgggttt 6348454  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 28249877 - 28249845
Alignment:
Q  187 gttttactttttccaccctatgtctttccttgc 219  Q
    |||||||||||||||||||||| ||||||||||    
T  28249877 gttttactttttccaccctatgcctttccttgc 28249845  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 5935260 - 5935293
Alignment:
Q  183 ttgagttttactttttccaccctatgtctttcct 216  Q
    ||||||||||||||||||||||||||||||||||    
T  5935260 ttgagttttactttttccaccctatgtctttcct 5935293  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 34951142 - 34951111
Alignment:
Q  185 gagttttactttttccaccctatgtctttcct 216  Q
    ||||||||||||||||||||||||||||||||    
T  34951142 gagttttactttttccaccctatgtctttcct 34951111  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 8735025 - 8735067
Alignment:
Q  185 gagttttactttttccaccctatgtctttccttgcacgtccta 227  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  8735025 gagttttacttttctcacactatgtctttccttgcacgtccta 8735067  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 9087266 - 9087308
Alignment:
Q  185 gagttttactttttccaccctatgtctttccttgcacgtccta 227  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  9087266 gagttttacttttctcacactatgtctttccttgcacgtccta 9087308  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 114413 - 114376
Alignment:
Q  190 ttactttttccaccctatgtctttccttgcacgtccta 227  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  114413 ttactttttccaccctatgtctttcctcgcacgcccta 114376  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 2539439 - 2539476
Alignment:
Q  190 ttactttttccaccctatgtctttccttgcacgtccta 227  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  2539439 ttactttttccaccctatgtctttcctcgcacgcccta 2539476  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 219
Target Start/End: Original strand, 31721916 - 31721945
Alignment:
Q  190 ttactttttccaccctatgtctttccttgc 219  Q
    ||||||||||||||||||||||||||||||    
T  31721916 ttactttttccaccctatgtctttccttgc 31721945  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 12523163 - 12523200
Alignment:
Q  190 ttactttttccaccctatgtctttccttgcacgtccta 227  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  12523163 ttactttttccaccctatgtctttcctcgcacgcccta 12523200  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 49852849 - 49852816
Alignment:
Q  183 ttgagttttactttttccaccctatgtctttcct 216  Q
    ||||||||||||||| ||||||||||||||||||    
T  49852849 ttgagttttacttttcccaccctatgtctttcct 49852816  T

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