View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3111_high_3 (Length: 239)
Name: NF3111_high_3
Description: NF3111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3111_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24709063 - 24709280
Alignment:
| Q |
1 |
cttctaatctagtttgttgttctatcaatgcaaatgatatccttcttaactatgatccaggcattgctagaggagttggttggcaaaaaatcggcgcata |
100 |
Q |
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| T |
24709063 |
cttctaatccagtttcttgttctaacaatgcaagtgatatccttgttaactacgatccaggcactgttagaggagttggtaggcaaaatattggcgcata |
24709162 |
T |
|
| Q |
101 |
tgtcaatctcgggtcatactatttggttgggactccagcagccgttgtattagcttttgcattgcatattggtgggaaggtaaataaatgttttccagtt |
200 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||| |
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| T |
24709163 |
tgtcaatctcgggtcttactatttggtagggactccagcagccgttgtattagctttcgtattgcatattggtgggaaggtaaataaatgttgtccggtt |
24709262 |
T |
|
| Q |
201 |
tttcaaaaaattgctaac |
218 |
Q |
| |
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||| |||||||||||||| |
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| T |
24709263 |
tttaaaaaaattgctaac |
24709280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 30510508 - 30510305
Alignment:
| Q |
15 |
tgttgttctatcaatgcaaatgatatccttcttaactatgatccaggcattgctagaggagttggttggcaaaaaatcggcgcatatgtcaatctcgggt |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30510508 |
tgttgttctaacaatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttggttggcaaaagatcggcgcatatgtcaatctcgggt |
30510409 |
T |
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| Q |
115 |
catactatttggttgggactccagcagccgttgtattagcttttgcattgcatattggtgggaaggtaaataaatgtt-ttccagtttttcaaaaaattg |
213 |
Q |
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| T |
30510408 |
catactatttagttgggattccagcagcagttgtattagcttttgtattgcatgttggcgggaaggtaaataaatgttgttcatttttttgaaaaaattg |
30510309 |
T |
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| Q |
214 |
ctaa |
217 |
Q |
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|||| |
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| T |
30510308 |
ctaa |
30510305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 30501237 - 30501105
Alignment:
| Q |
49 |
actatgatccaggcattgctagaggagttggttggcaaaaaatcggcgcatatgtcaatctcgggtcatactatttggttgggactccagcagccgttgt |
148 |
Q |
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|||||||| |||||| |||||||||| ||||||||| ||||| |||| | ||||||||| || ||||||||||| || || | ||||||||| ||||| |
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| T |
30501237 |
actatgattcaggcactgctagaggatgtggttggcagaaaatttgcgcgtttgtcaatcttggatcatactatttagtcggaattccagcagctgttgt |
30501138 |
T |
|
| Q |
149 |
attagcttttgcattgcatattggtgggaaggt |
181 |
Q |
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| T |
30501137 |
attagcttttgtactgcatattggcgggaaggt |
30501105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 30482895 - 30482760
Alignment:
| Q |
49 |
actatgatccaggcattgctagaggagttggttggcaaaaaatcggcgcatatgtcaatctcgggtcatactatttggttgggactccagcagccgttgt |
148 |
Q |
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||||| || |||||| |||||||||| ||||||||| ||||| ||||||| ||| ||||| || ||||| ||||| |||||| |||||| || ||||| |
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| T |
30482895 |
actataattcaggcactgctagaggatgtggttggcagaaaattggcgcatttgttaatcttggatcatattatttaattgggattccagccgctgttgt |
30482796 |
T |
|
| Q |
149 |
attagcttttgcattgcatattggtgggaaggtaaa |
184 |
Q |
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||| ||||||| | | |||||||| ||||||||||| |
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| T |
30482795 |
attcgcttttgtactacatattggcgggaaggtaaa |
30482760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 30475419 - 30475286
Alignment:
| Q |
55 |
atccaggcattgctagaggagttggttggcaaaaaatcggcgcatatgtcaatctcgggtcatactatttggttgggactccagcagccgttgtattagc |
154 |
Q |
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|||||||||||||||||||| ||||| ||||||| || ||| ||||||| | ||||||| |||||| ||||||| |||||||||| | |||| || |
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| T |
30475419 |
atccaggcattgctagaggatctggtttgcaaaaagctggtgcagttgtcaatttggggtcatgctatttagttgggattccagcagccataatatttgc |
30475320 |
T |
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| Q |
155 |
ttttgcattgcatattggtgggaaggtaaataaa |
188 |
Q |
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||||| ||||||||| |||| |||||||| |||| |
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| T |
30475319 |
ttttgtattgcatatcggtgtgaaggtaattaaa |
30475286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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