View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3111_low_1 (Length: 500)
Name: NF3111_low_1
Description: NF3111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3111_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 255 - 483
Target Start/End: Original strand, 42238401 - 42238629
Alignment:
| Q |
255 |
aaatcattttcttcggatgaatgaaagtttatatgagttggacttcaaatactaccaaagacggattttaaagttcatagatagagcgttaatatagtat |
354 |
Q |
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| T |
42238401 |
aaatcattttcttcggatgaatgaaagtttatatgagttgaacttcaaatactatcaaagacggattttaaagctcatagatagagcgttaacatggtat |
42238500 |
T |
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| Q |
355 |
ttaccaattaaccaccaaaaagagcactacgctcaccgcagaaattgaactttcatttgcataggctataagtcaacttcttatcaactggataagacaa |
454 |
Q |
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| T |
42238501 |
ttaccgattaaccaccaaaaagagcactacgctaactgcagaaattgaactttcgcttgcataggctataagtcaacttcttaccaaccgaataagacaa |
42238600 |
T |
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| Q |
455 |
attcgatttctatatgtgagcactcaaac |
483 |
Q |
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| T |
42238601 |
agtcgatttctatctgtgagcactcaaac |
42238629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 42238179 - 42238342
Alignment:
| Q |
10 |
ataattctatgataacaaatgttgattgattttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacact |
109 |
Q |
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| T |
42238179 |
ataattctatgataacaaatgttgattgaatttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacact |
42238278 |
T |
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| Q |
110 |
atgttgaacaataaacttaagattaaaaatctacaagattaaaaatcaattgtagacataaaag |
173 |
Q |
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| T |
42238279 |
atgttgaacaataaacttaagattaaaaatctacaagattaaaaatcaattgcagacataaaag |
42238342 |
T |
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