View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3111_low_2 (Length: 383)

Name: NF3111_low_2
Description: NF3111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3111_low_2
NF3111_low_2
[»] chr4 (3 HSPs)
chr4 (17-108)||(1425394-1425485)
chr4 (160-198)||(52480959-52480997)
chr4 (227-259)||(22326542-22326574)
[»] chr1 (2 HSPs)
chr1 (151-259)||(26084512-26084620)
chr1 (160-198)||(23859958-23859996)
[»] chr8 (3 HSPs)
chr8 (151-258)||(28502747-28502854)
chr8 (151-258)||(28510305-28510412)
chr8 (151-259)||(18757603-18757711)
[»] chr6 (3 HSPs)
chr6 (151-260)||(24678534-24678643)
chr6 (151-258)||(24689126-24689233)
chr6 (160-198)||(7410885-7410923)
[»] chr2 (4 HSPs)
chr2 (153-258)||(38850929-38851034)
chr2 (151-259)||(35336456-35336564)
chr2 (151-198)||(40064594-40064641)
chr2 (160-258)||(23740652-23740750)
[»] scaffold0624 (1 HSPs)
scaffold0624 (155-259)||(2229-2333)
[»] scaffold0427 (1 HSPs)
scaffold0427 (151-258)||(118-225)
[»] chr7 (4 HSPs)
chr7 (160-261)||(13820221-13820322)
chr7 (163-198)||(12512408-12512443)
chr7 (160-198)||(12768670-12768708)
chr7 (160-198)||(24859276-24859314)
[»] chr5 (2 HSPs)
chr5 (160-259)||(23761181-23761280)
chr5 (160-259)||(23826642-23826741)
[»] chr3 (2 HSPs)
chr3 (151-258)||(23007173-23007280)
chr3 (151-258)||(49432898-49433005)
[»] scaffold0594 (1 HSPs)
scaffold0594 (151-200)||(6794-6843)
[»] scaffold0081 (1 HSPs)
scaffold0081 (259-309)||(6907-6957)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 1425485 - 1425394
Alignment:
Q  17 cagtgattggcaggagaatttaaagtttttggatttggagaggtagattacatattgcatatttagattacatatgaagatgcaacatgtat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1425485 cagtgattggcaggagaatttaaagtttttggatttggagaggtagattacatattgcatatttagattacatatgaagatgcaacatgtat 1425394  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 52480959 - 52480997
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  52480959 tgctttccgacgaaaatttcgtcgctaattcgtaggaaa 52480997  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 22326574 - 22326542
Alignment:
Q  227 ctttgtagaaaaattcaatatttcttgtagtga 259  Q
    |||||||| ||||||||||||||||||||||||    
T  22326574 ctttgtaggaaaattcaatatttcttgtagtga 22326542  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 26084512 - 26084620
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  26084512 actgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 26084611  T
Q  251 ttgtagtga 259  Q
    |||||||||    
T  26084612 ttgtagtga 26084620  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 23859958 - 23859996
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  23859958 tgctttccgacgaatatttcgtcgctaattcgtaggaaa 23859996  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 28502747 - 28502854
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  28502747 actgacatgtgctttcctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 28502846  T
Q  251 ttgtagtg 258  Q
    ||||||||    
T  28502847 ttgtagtg 28502854  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 28510305 - 28510412
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  28510305 actgacatgtgctttcctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 28510404  T
Q  251 ttgtagtg 258  Q
    ||||||||    
T  28510405 ttgtagtg 28510412  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 18757711 - 18757603
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||| ||||||||  ||||||||||||||||||||| |||||||||        | ||||| |||| | |||| ||||||| ||||| |||||||||    
T  18757711 actgacaggtgctttccaacgaaaatttcgtcgctaatttgtaggaaactactttctaagaaatttcgtcggaaaattttgtaggaaaatccaatatttc 18757612  T
Q  251 ttgtagtga 259  Q
    ||| |||||    
T  18757611 ttgcagtga 18757603  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 24678534 - 24678643
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||||||||  |||||| |||||| | ||||||||||||||||       ||||||| |||| ||||| |||||||| |||||||||||||||    
T  24678534 actgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaaccctttcctaggaaatttcgtcgaaaatctttgtaggaaaattcaatatttc 24678633  T
Q  251 ttgtagtgat 260  Q
    ||||||||||    
T  24678634 ttgtagtgat 24678643  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 24689126 - 24689233
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||||||||  |||||| |||||| | ||||||||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  24689126 actgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaaccctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 24689225  T
Q  251 ttgtagtg 258  Q
    ||||||||    
T  24689226 ttgtagtg 24689233  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 7410885 - 7410923
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  7410885 tgctttccgacgaaaatttcgtcggtaattcgtaggaaa 7410923  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 38850929 - 38851034
Alignment:
Q  153 tgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttctt 252  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| |       ||||||| |||| | ||| |||||||| |||||||||||||||||    
T  38850929 tgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaatctttttttaggaaatttcgtcggaaatctttgtaggaaaattcaatatttctt 38851028  T
Q  253 gtagtg 258  Q
    ||||||    
T  38851029 gtagtg 38851034  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 35336564 - 35336456
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||        ||||||| || | | |||  || |||||||||| |||||||||    
T  35336564 actgacatgtgttttccgacgaatatttcgtcgctaattcgtaggaaacaaactcctaggaaatttcctcggaaagtttagtagaaaaatccaatatttc 35336465  T
Q  251 ttgtagtga 259  Q
    |||||||||    
T  35336464 ttgtagtga 35336456  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 40064641 - 40064594
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  40064641 actgacatttgctttccgacgaaaatttcgtcgctaattcgtaggaaa 40064594  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 23740750 - 23740652
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtg 258  Q
    ||||||| ||||||||||||||||||||||||||||||| |       ||||||| |||| | |||| ||||||| ||||| ||  |||||||||||||    
T  23740750 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaaattttgtaggaaaatccaccatttcttgtagtg 23740652  T

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Target: scaffold0624 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 2333 - 2229
Alignment:
Q  155 acatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgt 254  Q
    ||||||||||||  |||||||||||||||||||||||||| |||||       ||||||| |||| |||||  ||||||| |||||||||||||||||||    
T  2333 acatgtgctttcctacgaaaatttcgtcgctaattcgtagaaaacctttttctaggaaatttcgtcgaaaatttttgtaggaaaattcaatatttcttgt 2234  T
Q  255 agtga 259  Q
    |||||    
T  2233 agtga 2229  T

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Target: scaffold0427 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 118 - 225
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||||||||||||  |||||| |||||| | ||||||||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  118 actgacatgtgctttcctacgaaagtttcgtagataattcgtaggaaaccctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 217  T
Q  251 ttgtagtg 258  Q
    ||||||||    
T  218 ttgtagtg 225  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 13820322 - 13820221
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtga 259  Q
    ||||||| |||||||||||||||||||||||||||||||||       ||||||| |||| | |||  ||||||| ||||| || |||||||||||||||    
T  13820322 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgtagtga 13820223  T
Q  260 tt 261  Q
    ||    
T  13820222 tt 13820221  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 12512408 - 12512443
Alignment:
Q  163 tttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    |||| |||||||||||||||||||||||||||||||    
T  12512408 tttccgacgaaaatttcgtcgctaattcgtaggaaa 12512443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 12768670 - 12768708
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12768670 tgctttccgacgaaaatttcgtcggtaattcgtaggaaa 12768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 24859314 - 24859276
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 198  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  24859314 tgctttccgacgaatatttcgtcgctaattcgtaggaaa 24859276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 23761280 - 23761181
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtga 259  Q
    ||||||| ||||||||||||||||||||||||||||||| |       ||||||| |||| | |||  ||||||| ||||| || |||||||||||||||    
T  23761280 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgtagtga 23761181  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 23826741 - 23826642
Alignment:
Q  160 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtga 259  Q
    ||||||| ||||||||||||||||||||||||||||||| |       ||||||| |||| | |||  ||||||| ||||| || |||||||||||||||    
T  23826741 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgtagtga 23826642  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 23007280 - 23007173
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||       ||||||| |||| | |||  ||||||| |||||  | ||||||    
T  23007280 actgacagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatctagtatttc 23007181  T
Q  251 ttgtagtg 258  Q
    ||||||||    
T  23007180 ttgtagtg 23007173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 49433005 - 49432898
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 250  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||||||        ||||||  |||| | |||| |||||||||||||  ||||||||    
T  49433005 actgacaagtgctttccgacgaaaacttcgtcgctaattcgtaggaaactactttctaggaaacttcgtcgtaaaattttgtagaaaaatctaatatttc 49432906  T
Q  251 ttgtagtg 258  Q
    || |||||    
T  49432905 ttttagtg 49432898  T

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Target: scaffold0594 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 6843 - 6794
Alignment:
Q  151 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaacc 200  Q
    |||||||  ||||||| ||||||| |||||||||||||||||||||||||    
T  6843 actgacagttgctttccgacgaaattttcgtcgctaattcgtaggaaacc 6794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 6907 - 6957
Alignment:
Q  259 attgtgcagttttgttatcaaaagcatggatatcctaactcaattaagccc 309  Q
    |||||| ||||||| ||||||||||||||||| ||||||||| | ||||||    
T  6907 attgtggagttttgctatcaaaagcatggataccctaactcattcaagccc 6957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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