View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112-Insertion-10 (Length: 303)
Name: NF3112-Insertion-10
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112-Insertion-10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 4202145 - 4201850
Alignment:
| Q |
8 |
ctattggcaatggtgaagatgaatttgcttacttggctacagttcatattagtggccatgttttcaaagggtttctctatgatcatggtgttgatgggaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4202145 |
ctattggcaatggtgaagatgaatttgcttacttggccacagttcatattagtggccatgttttcaaagggtttctctatgatcatggtgttgatgggaa |
4202046 |
T |
|
| Q |
108 |
aaatccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaaaaatggtgaatgttcttctgcaattggtgttcccaacaataatgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4202045 |
aaatccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaaaaatggtgaatgttcttctgcaattggtgttcccaacaataatgct |
4201946 |
T |
|
| Q |
208 |
taccctgcttctgctagctagccatgaagattgattatcaggtacataatttgactttgatttgatctaaagttacattttgtaccatatttgtta |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4201945 |
taccctgcttctgctagctagccatgaagattgattatcaggtacataatttgactttgatttgatttaaagttacattttgtaccatatttgtta |
4201850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 14513702 - 14513858
Alignment:
| Q |
8 |
ctattggcaatggtgaagatgaatttgcttacttggctacagttcatattagtggccatgttttcaaagggtttctctatgatcatggtgttgatgggaa |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || || |||||||||||||||| || |||||||||||||||||||| || ||||||| || |
|
|
| T |
14513702 |
ctattggcaatggtgaagatgaacttgcttacttggccactgtgaatattagtggccatgtatttaaagggtttctctatgatcaaggagttgatgacaa |
14513801 |
T |
|
| Q |
108 |
aaat---ccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaa |
161 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| | |||| |||| | |||||||| |
|
|
| T |
14513802 |
aaatgaaacaatgccttgtgtttcagaattgcaacttggaagtaatggaagtggaaa |
14513858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 39018461 - 39018419
Alignment:
| Q |
59 |
gtggccatgttttcaaagggtttctctatgatcatggtgttga |
101 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
39018461 |
gtggccatgttttcaaaggttttctttatgatcatggtgttga |
39018419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University