View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112-Insertion-2 (Length: 920)

Name: NF3112-Insertion-2
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112-Insertion-2
NF3112-Insertion-2
[»] chr2 (12 HSPs)
chr2 (8-920)||(37497090-37497992)
chr2 (56-290)||(37500353-37500587)
chr2 (55-201)||(37504363-37504508)
chr2 (673-839)||(37498680-37498844)
chr2 (356-471)||(37499212-37499327)
chr2 (769-840)||(18840953-18841023)
chr2 (771-840)||(2438661-2438729)
chr2 (770-825)||(40361678-40361733)
chr2 (767-805)||(21616828-21616866)
chr2 (767-813)||(37419829-37419875)
chr2 (763-824)||(26769586-26769647)
chr2 (769-822)||(42511322-42511375)
[»] chr7 (9 HSPs)
chr7 (769-909)||(598189-598327)
chr7 (769-882)||(21880160-21880271)
chr7 (770-859)||(22484055-22484143)
chr7 (773-823)||(40287306-40287356)
chr7 (767-824)||(5409769-5409826)
chr7 (767-822)||(9778571-9778626)
chr7 (769-835)||(43027404-43027469)
chr7 (767-840)||(7438766-7438838)
chr7 (770-903)||(20549778-20549909)
[»] chr3 (15 HSPs)
chr3 (767-859)||(40993273-40993364)
chr3 (825-904)||(20691305-20691383)
chr3 (769-824)||(27505315-27505370)
chr3 (765-824)||(29508514-29508573)
chr3 (767-824)||(41961577-41961634)
chr3 (767-824)||(49651714-49651771)
chr3 (769-881)||(20503474-20503584)
chr3 (770-880)||(8789489-8789599)
chr3 (769-852)||(8842366-8842448)
chr3 (769-840)||(55401124-55401194)
chr3 (801-887)||(45451556-45451640)
chr3 (809-883)||(48202248-48202321)
chr3 (830-887)||(13807172-13807228)
chr3 (767-840)||(14209173-14209245)
chr3 (771-916)||(24204983-24205126)
[»] chr6 (13 HSPs)
chr6 (769-878)||(7377991-7378098)
chr6 (767-882)||(28715303-28715416)
chr6 (767-859)||(12236688-12236780)
chr6 (772-840)||(32978842-32978909)
chr6 (771-882)||(7265535-7265644)
chr6 (766-840)||(10339051-10339124)
chr6 (767-840)||(18367896-18367968)
chr6 (770-859)||(33419203-33419292)
chr6 (769-840)||(28152147-28152217)
chr6 (770-915)||(9658854-9658998)
chr6 (767-840)||(4877992-4878063)
chr6 (772-813)||(9025448-9025489)
chr6 (769-882)||(34595142-34595253)
[»] chr1 (15 HSPs)
chr1 (769-909)||(38078601-38078739)
chr1 (767-916)||(2896059-2896206)
chr1 (766-859)||(5898203-5898295)
chr1 (767-840)||(9828104-9828176)
chr1 (771-824)||(17778617-17778670)
chr1 (769-837)||(18556385-18556452)
chr1 (771-859)||(29163323-29163410)
chr1 (769-840)||(22515827-22515897)
chr1 (769-840)||(32461393-32461463)
chr1 (768-859)||(37598861-37598951)
chr1 (769-840)||(47989557-47989627)
chr1 (774-840)||(351023-351089)
chr1 (767-813)||(22881565-22881611)
chr1 (771-884)||(11412709-11412821)
chr1 (767-824)||(40917824-40917881)
[»] chr8 (14 HSPs)
chr8 (765-812)||(27213601-27213648)
chr8 (769-917)||(33405324-33405470)
chr8 (791-862)||(44462157-44462227)
chr8 (791-862)||(44469690-44469760)
chr8 (769-882)||(14134707-14134818)
chr8 (769-813)||(15816058-15816102)
chr8 (771-882)||(3025559-3025668)
chr8 (769-840)||(14513108-14513179)
chr8 (769-840)||(22652036-22652106)
chr8 (769-840)||(29447504-29447574)
chr8 (825-883)||(12985399-12985456)
chr8 (769-835)||(39820482-39820547)
chr8 (826-887)||(12606825-12606885)
chr8 (767-840)||(29510231-29510303)
[»] chr5 (3 HSPs)
chr5 (771-882)||(30502330-30502439)
chr5 (771-882)||(30542673-30542782)
chr5 (767-840)||(43564930-43565002)
[»] chr4 (16 HSPs)
chr4 (769-882)||(8423658-8423769)
chr4 (769-840)||(23292926-23292996)
chr4 (770-840)||(30982808-30982877)
chr4 (767-840)||(22234817-22234889)
chr4 (767-840)||(24613628-24613700)
chr4 (769-813)||(37203327-37203371)
chr4 (769-824)||(715545-715600)
chr4 (769-824)||(752871-752926)
chr4 (769-840)||(24343561-24343632)
chr4 (824-915)||(33950111-33950201)
chr4 (769-840)||(35157925-35157995)
chr4 (848-909)||(12077809-12077869)
chr4 (770-835)||(14465006-14465070)
chr4 (766-835)||(17876219-17876288)
chr4 (772-881)||(46715416-46715524)
chr4 (767-840)||(53381528-53381601)
[»] scaffold0003 (1 HSPs)
scaffold0003 (769-824)||(241669-241724)
[»] scaffold0793 (1 HSPs)
scaffold0793 (769-824)||(4821-4876)
[»] scaffold0086 (1 HSPs)
scaffold0086 (769-840)||(2988-3058)
[»] scaffold0652 (1 HSPs)
scaffold0652 (770-887)||(403-518)
[»] scaffold0019 (1 HSPs)
scaffold0019 (767-840)||(71785-71857)


Alignment Details
Target: chr2 (Bit Score: 761; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Complemental strand, 37497992 - 37497090
Alignment:
Q  8 gtctgctaggtaagatagttgatatgctaattgcgtcactgtctctagtccttatcaaccaacacattttttatcaactcaaatcattaagtttcatccc 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497992 gtctgctaggtaagctagttgatatgctaattgcgtcactgtctctagtccttatcaaccaacacattttttatcaactcaaatcattaagtttcatccc 37497893  T
Q  108 ctaccacaaaa-gctatgtatgtatttatacactttaaactcatgcaacaaacattagataagagaaataaattaaagtgactaaccttgtgaaactaat 206  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  37497892 ctgccacaaaaagctatgtatgtatttatacactttaaactcatgcaacaaacattagataagagaaataatttaaagtgaccaaccttgtgaaactaat 37497793  T
Q  207 tcattattgaatagcatttgtatcaatagtttgcgtctgcatctgctaattaagtttgcttggaaactaaagctagttacatctactaactgcacctgtt 306  Q
    ||||||||||||||||||||||||||||||||| |||||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  37497792 tcattattgaatagcatttgtatcaatagtttgtgtctg---------------tttgcttggaaactaaagctagttacatctactaactgcacctgtt 37497708  T
Q  307 tgctaagtagtgcatatgtctagtcctaatcagcaaagactaagctgttgcaacttaaatcaatttggttatattcattgctagaaaaagttatgcatat 406  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37497707 tgctaagtagtgcatatgtctagtcctaatcagctaagactaagcttttgcaacttaaatcaatttggttatattccttgctagaaaaagttatgcatat 37497608  T
Q  407 atacacttcagattcatacaacatgaattggataacataaataaatgaaaataactaaatttaaaatgaaatgaacttgataattgtatcaactacttgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  37497607 atacacttcagattcatacaacatgaattggataacataaataaatgaaaataactaaacttaaaatgaaacgaacttgataattgtatcaactagttgt 37497508  T
Q  507 gtctatctgcaattgataactacaccagttatgtctattaactaaggctagttgcatctactaactataccatatatgtctgccaagtaaagttaactcc 606  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497507 gtctatctgcaattgataactacaccagatatgtctattaactaaggctagttgcatctactaactataccatatatgtctgccaagtaaagttaactcc 37497408  T
Q  607 acctagtccttatcagcaaatgttttcttaactcaaatccattagatttgattccttgtcacagagagcttagggtttacaaatattttagcaattgtgc 706  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497407 acctagtccttatcaacaaatgttttcttaactcaaatccattagatttgattccttgtcacagagagcttagggtttacaaatattttagcaattgtgc 37497308  T
Q  707 caccaacctaaagaatatttttctgtttgttttgatat-----ttgaatataaaagccacatgtcacctatgaagcacggacacttctgggattagccat 801  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497307 caccaacctaaagaatatttttctgtttgttttgatatttgatttgaatataaaagccacatgtcacctatgaagcacggacacttctgggattagccat 37497208  T
Q  802 gtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattatcagtaccgatgtgtcagt 901  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  37497207 gtcccggtgccgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgt-ggcattttctcaaattattatcagtgtcgatgtgtcagt 37497109  T
Q  902 gttcgtgttgtgtccaatg 920  Q
    ||| || ||||||||||||    
T  37497108 gtttgttttgtgtccaatg 37497090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 56 - 290
Target Start/End: Complemental strand, 37500587 - 37500353
Alignment:
Q  56 tccttatcaaccaacacattttttatcaactcaaatcattaagtttcatcccctaccacaaaagctatgtatgtatttatacactttaaactcatgcaac 155  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||| ||||||||| |||||||||||||||||    |||||||||| |||||| | ||||    
T  37500587 tccttatcaacaaacacgttgtttctcaactcaaatcattaagtctcatcccctgccacaaaagctatgtat----ttatacacttcaaactcgtacaac 37500492  T
Q  156 aaacattagataagagaaataaattaaagtgactaaccttgtgaaactaattcattattgaatagcatttgtatcaatagtttgcgtc----tgcatctg 251  Q
    | |||||  ||||||||||||| || |||| ||||| ||||||||| ||| |||| |||||||| ||||| ||||||||||  |||||    ||||||||    
T  37500491 atacatttaataagagaaataatttgaagtaactaatcttgtgaaattaactcataattgaataacatttatatcaatagtcagcgtctgtgtgcatctg 37500392  T
Q  252 ctaattaagtttgcttggaaactaaagctagttacatct 290  Q
    |||||||| |||||  |  ||||||||||||||| ||||    
T  37500391 ctaattaaatttgcaggttaactaaagctagttatatct 37500353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 37504508 - 37504363
Alignment:
Q  55 gtccttatcaaccaacacat-tttttatcaactcaaatc-attaagtttcatcccctaccaca-aaagctatgtatgtatttatacactttaaactcatg 151  Q
    ||||||| |||| ||||||| ||||| |||||||||||| |||| ||| |||||||| ||||| ||||||||||||    ||||||||||||| ||||||    
T  37504508 gtccttaacaactaacacatatttttctcaactcaaatccattatgttccatcccctgccacataaagctatgtat----ttatacactttaagctcatg 37504413  T
Q  152 caacaaacattagataagagaaataaattaaagtgactaaccttgtgaaa 201  Q
    ||||| ||||||||| ||| |||||| ||||| | ||||||||| |||||    
T  37504412 caacatacattagattagaaaaataatttaaattaactaaccttatgaaa 37504363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 673 - 839
Target Start/End: Complemental strand, 37498844 - 37498680
Alignment:
Q  673 agcttagggtttacaaatattttagcaattgtgccaccaacctaa-agaatatttttctgtttgttttgatatttgaatataaaagccacatgtcaccta 771  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||| | ||||||||  | ||||| |||||||||||| ||||||| |||||||||| ||    
T  37498844 agctttgggtttacaa-tattttag-aattgtgccaccaacctaagacaatattttattatttgtcttgatatttgaagataaaagtcacatgtcacgta 37498747  T
Q  772 tgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgac 839  Q
    || |||||  || || || | ||||||||||||   ||||| ||||||||||| ||| ||||||||||    
T  37498746 tg-agcacaaacgctactcgaattagccatgtctttgtgtcaaacatgtgtcgatgtttgacaccgac 37498680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 356 - 471
Target Start/End: Complemental strand, 37499327 - 37499212
Alignment:
Q  356 gcaacttaaatcaatttggttatattcattgctagaaaaa-gttatgcatatatacacttcagattcatacaacatgaattggataacataaataaatga 454  Q
    |||||||||||| ||||||| |||||| |||||| ||||| |||||| |||||| | ||| | ||||||||||||||||    |||||||||||||||||    
T  37499327 gcaacttaaatccatttggtaatattccttgctaaaaaaaagttatgtatatat-ctcttgaaattcatacaacatgaagcacataacataaataaatga 37499229  T
Q  455 aaataactaaatttaaa 471  Q
    || |||||||| |||||    
T  37499228 aagtaactaaacttaaa 37499212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 18840953 - 18841023
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| || |||||||   ||||||||||||| ||||||||| ||||||||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc-gtgtctgacaccgaca 18841023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 771 - 840
Target Start/End: Original strand, 2438661 - 2438729
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||| || ||||||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgaca 2438729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 825
Target Start/End: Original strand, 40361678 - 40361733
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcgg 825  Q
    ||||||||||||||||||||  || || ||||||| ||||||||||||| ||||||    
T  40361678 tatgaagcacggacacttcttagactaaccatgtctcggtgtcgaacatatgtcgg 40361733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 805
Target Start/End: Complemental strand, 21616866 - 21616828
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcc 805  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  21616866 acctatgaagcacggacacttcttggattagccgtgtcc 21616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 813
Target Start/End: Complemental strand, 37419875 - 37419829
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcg 813  Q
    |||||||||||||||||||| || ||||||| | |||||||||||||    
T  37419875 acctatgaagcacggacactcctcggattaggcgtgtcccggtgtcg 37419829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 824
Target Start/End: Complemental strand, 26769647 - 26769586
Alignment:
Q  763 tgtcacctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    ||||| |||||||||||||||||| || ||||||| | |||||| |||||| ||| ||||||    
T  26769647 tgtcatctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcg 26769586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 822
Target Start/End: Original strand, 42511322 - 42511375
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgt 822  Q
    |||||||||||||||||| || ||||||||| |||||| |||||| ||| ||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgt 42511375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 769 - 909
Target Start/End: Complemental strand, 598327 - 598189
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||| ||| ||||| ||||||||||||||||  ||  |||||||| ||||  | | |||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacttacaattacatttaattacgtg-att 598230  T
Q  869 ttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 909  Q
    |||| ||||||||| | ||  |||||||||||||| |||||    
T  598229 ttcttaaattattagcggtgtcgatgtgtcagtgtccgtgt 598189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 769 - 882
Target Start/End: Complemental strand, 21880271 - 21880160
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||| ||||||||| ||||| ||||||||||  | | |||||| |||||| | |  |||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc-gtgtccgacaccgacacttgtaattacactgaattat-gtaatt 21880174  T
Q  869 ttctcaaattatta 882  Q
    ||||||||||||||    
T  21880173 ttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 22484143 - 22484055
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    |||||||||||||||||||| |||| || |||||| || ||||| |||||||||  ||||||||||||||| |||| |||| | ||||||    
T  22484143 tatgaagcacggacacttctcggatcagacatgtctcgatgtcggacatgtgtc-atgtctgacaccgacacatataattatactgaatt 22484055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 823
Target Start/End: Original strand, 40287306 - 40287356
Alignment:
Q  773 gaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtc 823  Q
    |||||||||||||| || ||||||| ||||||||||||||| |||||||||    
T  40287306 gaagcacggacactcctcggattaggcatgtcccggtgtcggacatgtgtc 40287356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 824
Target Start/End: Original strand, 5409769 - 5409826
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||| ||| ||||||    
T  5409769 acctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcg 5409826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 767 - 822
Target Start/End: Complemental strand, 9778626 - 9778571
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgt 822  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||| ||| ||||    
T  9778626 acctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgt 9778571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 43027404 - 43027469
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacac 835  Q
    ||||||||||||||||||  | ||||||| | ||||||||||||| ||| ||||| |||||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 7438838 - 7438766
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || | ||||| | |||||  |||||| ||||||||| |||| |||||||||||    
T  7438838 acctatgaagcacggacactccttgaattaggcgtgtcctagtgtcgcacatgtgtc-gtgtttgacaccgaca 7438766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 903
Target Start/End: Complemental strand, 20549909 - 20549778
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcattt 869  Q
    |||||||||||| |||| || ||||||| | |||| |  ||||| |||||||| | |||| |||||||||| |||| |||||| ||||||  | | ||||    
T  20549909 tatgaagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttg-tgtccgacaccgacacatataattacactgaattacgtg-attt 20549812  T
Q  870 tctcaaattattatcagtaccgatgtgtcagtgt 903  Q
    ||||||||||||| | ||  || |||||||||||    
T  20549811 tctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 767 - 859
Target Start/End: Original strand, 40993273 - 40993364
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    |||||||||||| ||||||| || ||||||| | ||||||||||||| ||||||||| ||||| |||||||||| |||| |||||| ||||||    
T  40993273 acctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 904
Target Start/End: Complemental strand, 20691383 - 20691305
Alignment:
Q  825 gtgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattatcagtaccgatgtgtcagtgtt 904  Q
    |||||||||||||||| |||| |||||| |||||| ||  |||||||||||||||||||||||  | | |||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgt-cattttctcaaattattatcagtttctacgtgtcagtgtt 20691305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 769 - 824
Target Start/End: Complemental strand, 27505370 - 27505315
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||||||||||| || ||||||| ||||||||||||||| ||| ||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcg 27505315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 765 - 824
Target Start/End: Complemental strand, 29508573 - 29508514
Alignment:
Q  765 tcacctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    ||||| ||||||||||||||||||| ||||||| | ||||||||||||| || |||||||    
T  29508573 tcaccaatgaagcacggacacttcttggattagacgtgtcccggtgtcggacgtgtgtcg 29508514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 824
Target Start/End: Original strand, 41961577 - 41961634
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    ||||||||||||||||||||||| ||||||| | |||||| |||||| ||| ||||||    
T  41961577 acctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcg 41961634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 824
Target Start/End: Original strand, 49651714 - 49651771
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    ||||||||||||||||||||||| |||||||   ||||||||||||| | ||||||||    
T  49651714 acctatgaagcacggacacttctcggattaggtgtgtcccggtgtcggatatgtgtcg 49651771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 881
Target Start/End: Complemental strand, 20503584 - 20503474
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    |||||||||||||||||| || ||||||| | ||||||||||||  ||||||||| |||||  |||||||||  | | |||||| |||||| | | ||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtc-gtgtccaacaccgacacttgtaattacactgaattat-gtcatt 20503487  T
Q  869 ttctcaaattatt 881  Q
    || ||||||||||    
T  20503486 ttttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 880
Target Start/End: Original strand, 8789489 - 8789599
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgt-cggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    ||||||||||||||||| || ||||||| | |||| |||||||  ||||||||   ||||| |||||||||| |||| ||||||  ||||| || | |||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaattatgtg-att 8789587  T
Q  869 ttctcaaattat 880  Q
    ||||||||||||    
T  8789588 ttctcaaattat 8789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 852
Target Start/End: Complemental strand, 8842448 - 8842366
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattaca 852  Q
    |||||||||||||||||| || ||||||| | |||| |  | || |||||||||| |||||||||||||||| |||| ||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtc-gtgtctgacaccgacatatataattaca 8842366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 55401194 - 55401124
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| || ||||||| | |||| |||||||| ||| ||||| ||||| ||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgaca 55401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 887
Target Start/End: Complemental strand, 45451640 - 45451556
Alignment:
Q  801 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattatcagt 887  Q
    |||| |||||||| |||||||||| |||| |||||||||| ||||||||| | |||| | || | ||||||||||||||||| ||||    
T  45451640 tgtctcggtgtcggacatgtgtcg-tgtccgacaccgacacatattattatactgaagtatgtg-attttctcaaattattagcagt 45451556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 809 - 883
Target Start/End: Original strand, 48202248 - 48202321
Alignment:
Q  809 tgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattat 883  Q
    |||||||||||||| ||||| |||||| |||| |||| |||||||| |||| || | ||||||||||| ||||||    
T  48202248 tgtcgaacatgtgttggtgtttgacacagacacatataattacattaaattatgtg-attttctcaaactattat 48202321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 830 - 887
Target Start/End: Complemental strand, 13807228 - 13807172
Alignment:
Q  830 tgacaccgacagatattattacattgaattgtgggcattttctcaaattattatcagt 887  Q
    ||||||||||| ||||||||| |||||||| || | ||||||||||||| ||||||||    
T  13807228 tgacaccgacacatattattatattgaattatgtg-attttctcaaattgttatcagt 13807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 14209245 - 14209173
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||||||||||||| |||||||   | ||||| ||||| ||| ||||| ||||| ||||||||||    
T  14209245 acctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtc-gtgtccgacaccgaca 14209173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 916
Target Start/End: Original strand, 24204983 - 24205126
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatttt 870  Q
    |||||||||||||||| || | ||||| | ||||| ||||||| ||| | ||| ||||| ||||| ||||  ||| |||||| || ||| ||  ||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacac-gacacttataattacactgtattatgt-catttt 24205080  T
Q  871 ctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 916  Q
    |||||||||||||| ||  ||  |||||||||| ||||| ||||||    
T  24205081 ctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtcc 24205126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 769 - 878
Target Start/End: Complemental strand, 7378098 - 7377991
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    |||||||||||||||||||||  |||||||| ||||||||||||| |    |||| ||||| |||||||||| |||| ||||||||||||| || | |||    
T  7378098 ctatgaagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtc-gtgtccgacaccgacacatataattacattgaattatgtg-att 7378001  T
Q  869 ttctcaaatt 878  Q
    ||||||||||    
T  7378000 ttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 767 - 882
Target Start/End: Complemental strand, 28715416 - 28715303
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggca 866  Q
    |||||||||||||| |||||||| | ||||| | ||||||||||||||||| ||||| ||||| ||||||||||  | | |||||| |||||| | | ||    
T  28715416 acctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtc-gtgtccgacaccgacacttgtaattacactgaattat-gtca 28715319  T
Q  867 ttttctcaaattatta 882  Q
    |||| |||||||||||    
T  28715318 ttttttcaaattatta 28715303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 767 - 859
Target Start/End: Complemental strand, 12236780 - 12236688
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    |||||||||||||| ||||| ||  | |||| | |||||||||| ||||||||||||||||| | ||| ||||| |||  |||||||||||||    
T  12236780 acctatgaagcacgaacactcctcaggttaggcgtgtcccggtgccgaacatgtgtcggtgtttaacatcgacacatacgattacattgaatt 12236688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 840
Target Start/End: Original strand, 32978842 - 32978909
Alignment:
Q  772 tgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||||| || ||||||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgaca 32978909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 771 - 882
Target Start/End: Original strand, 7265535 - 7265644
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatttt 870  Q
    ||||||||||||| || || ||||||| ||| | ||||||||| |||||| |  ||||| |||||||||| |||| |||||| |||||| || | |||||    
T  7265535 atgaagcacggacgctcctcggattaggcatattccggtgtcggacatgtat-tgtgtccgacaccgacacatataattacactgaattatgtg-atttt 7265632  T
Q  871 ctcaaattatta 882  Q
    ||||||||||||    
T  7265633 ctcaaattatta 7265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 766 - 840
Target Start/End: Original strand, 10339051 - 10339124
Alignment:
Q  766 cacctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||||||||||| ||  |||||| | |||||| |||||| ||||||||| ||||| ||||||||||    
T  10339051 cacctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtc-gtgtccgacaccgaca 10339124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 18367968 - 18367896
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || |||| || | |||||| |||||  ||||||||| ||||||||||||||||    
T  18367968 acctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtc-gtgtctgacaccgaca 18367896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 33419292 - 33419203
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    ||||||||||  | |||||| ||||||| ||||||| ||||| | ||| | || ||||||||||||| ||| |||| |||||||||||||    
T  33419292 tatgaagcacaaatacttcttggattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaatt 33419203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 28152217 - 28152147
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||| ||||| || ||||||| | ||||||||||||| ||| ||||| ||||| ||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacaccgaca 28152147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 770 - 915
Target Start/End: Complemental strand, 9658998 - 9658854
Alignment:
Q  770 tatgaagcacggacacttc-tgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    ||||||||||||||||| | ||| ||||| | ||| ||||||||  ||| ||||| |||||| ||||||||| |||| |||||| |||||| || | |||    
T  9658998 tatgaagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtc-gtgtctaacaccgacaaatataattacactgaattatgtg-att 9658901  T
Q  869 ttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtc 915  Q
    |||| ||||||||| | ||  ||  |||||||||| ||||| |||||    
T  9658900 ttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 4878063 - 4877992
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || ||||||| | ||| || |||||| ||||||||| ||||| ||||||||||    
T  4878063 acctatgaagcacggacactcctcggattaggcgtgt-cctgtgtcggacatgtgtc-gtgtccgacaccgaca 4877992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 813
Target Start/End: Original strand, 9025448 - 9025489
Alignment:
Q  772 tgaagcacggacacttctgggattagccatgtcccggtgtcg 813  Q
    |||||||||||||||||| ||||||| | |||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcg 9025489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 882
Target Start/End: Complemental strand, 34595253 - 34595142
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    |||||||||||||||||| || |||||||   ||||||||||||  ||| ||||| ||||| ||||||||||  | | |||||| |||||| || | |||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacacttgtaattacactgaattatgtg-att 34595156  T
Q  869 ttctcaaattatta 882  Q
    || |||||||||||    
T  34595155 ttttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 769 - 909
Target Start/End: Original strand, 38078601 - 38078739
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    |||||||||||| | ||| || ||||||| | ||||| ||||| ||||||||||| ||||| ||||||||||  | | ||||||||||||| || | |||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtc-gtgtccgacaccgacacttgtaattacattgaattatgtg-att 38078698  T
Q  869 ttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 909  Q
    || ||||||||||| | ||  ||| ||||||||||||||||    
T  38078699 ttttcaaattattagctgtgtcgacgtgtcagtgttcgtgt 38078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 767 - 916
Target Start/End: Original strand, 2896059 - 2896206
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggca 866  Q
    ||||||||| || |||||||||| |||||||   ||||||||| ||| |||  ||||| ||||||||||||||| ||||   |||| |||||| || | |    
T  2896059 acctatgaaacatggacacttcttggattaggtgtgtcccggtctcggacacatgtcg-tgtctgacaccgacatatatagctacactgaattatgtg-a 2896156  T
Q  867 ttttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 916  Q
    |||||||||||||||| | ||  ||  |||||||||| ||||||||||||    
T  2896157 ttttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtcc 2896206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 766 - 859
Target Start/End: Original strand, 5898203 - 5898295
Alignment:
Q  766 cacctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    ||||||| ||||||||||||| || ||||||| | ||||||||||| | ||| ||||| |||||||||||||||  |||| |||||| ||||||    
T  5898203 cacctataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtc-gtgtctgacaccgacgcatataattacactgaatt 5898295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 9828176 - 9828104
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||| ||| ||||| ||||||||||| ||||    
T  9828176 acctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtc-gtgtctgacacggaca 9828104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 824
Target Start/End: Complemental strand, 17778670 - 17778617
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||| |||||||| ||||||| ||||||||||||||| ||| ||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacgtgtcg 17778617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 837
Target Start/End: Original strand, 18556385 - 18556452
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccg 837  Q
    ||||||||||||||||||||| ||||||| | |||||| |||||| | | ||||||| |||||||||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgg-gtctgacaccg 18556452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 859
Target Start/End: Original strand, 29163323 - 29163410
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    |||||||||| ||||||||  |||||||| ||||||||||||   || ||||| ||||| |||||||||| |||| |||| ||||||||    
T  29163323 atgaagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtc-gtgtccgacaccgacacatataattaaattgaatt 29163410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 22515827 - 22515897
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| || ||||||| | |||| |||||||| | ||||||| ||||| ||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtc-gtgtccgacaccgaca 22515897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 32461393 - 32461463
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||||||||||| ||||||| | |||||| |||||  ||| ||||| ||||| ||||||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtc-gtgtccgacaccgaca 32461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 859
Target Start/End: Complemental strand, 37598951 - 37598861
Alignment:
Q  768 cctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 859  Q
    ||||||||||||||||||| || ||||||| | ||||||  ||||| ||| ||||| ||||| ||||||||||  ||| |||||| ||||||    
T  37598951 cctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtc-gtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 47989627 - 47989557
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| || ||||||| | ||||||| ||||  ||||||||| ||||| ||||||||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtc-gtgtccgacaccgaca 47989557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 774 - 840
Target Start/End: Original strand, 351023 - 351089
Alignment:
Q  774 aagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||| |||||||| || ||||||| | ||||||||||| ||||||| |||||||||| ||| |||||    
T  351023 aagctcggacactccttggattaggcgtgtcccggtgttgaacatgcgtcggtgtctaacagcgaca 351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 813
Target Start/End: Original strand, 22881565 - 22881611
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcg 813  Q
    |||||||||||||||||||| || ||||||| | |||||||||||||    
T  22881565 acctatgaagcacggacactcctcggattagacgtgtcccggtgtcg 22881611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 884
Target Start/End: Original strand, 11412709 - 11412821
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatttt 870  Q
    |||||||||||||||| || |||| || |||||||  |||||| |||  ||| ||||||  |||||||||  ||| || |||||||||| | | ||||||    
T  11412709 atgaagcacggacactcctaggataaggcatgtcctagtgtcggacacatgttggtgtccaacaccgacacctatgatcacattgaattat-gtcatttt 11412807  T
Q  871 ctcaaattattatc 884  Q
    |||| |||||||||    
T  11412808 ctcatattattatc 11412821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 824
Target Start/End: Complemental strand, 40917881 - 40917824
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||||||||||| | || ||||||| | ||||||||||||| ||| ||||||    
T  40917881 acctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcg 40917824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 765 - 812
Target Start/End: Complemental strand, 27213648 - 27213601
Alignment:
Q  765 tcacctatgaagcacggacacttctgggattagccatgtcccggtgtc 812  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  27213648 tcacctatgaagcacggacacttctcggattagccgtgtcccggtgtc 27213601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 917
Target Start/End: Original strand, 33405324 - 33405470
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    ||||| ||||||||||||  | ||||||||| ||||| ||||||  ||||||||| ||||| |||||||||| |||| |||||| | |||| || |  ||    
T  33405324 ctatggagcacggacactcattggattagccgtgtccaggtgtcagacatgtgtc-gtgtccgacaccgacacatataattacactaaattatgtg-ttt 33405421  T
Q  869 ttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcca 917  Q
    |||||||||||||| |||  ||  ||||||||||| | ||| |||||||    
T  33405422 ttctcaaattattaacagggccagtgtgtcagtgtccatgtcgtgtcca 33405470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 791 - 862
Target Start/End: Original strand, 44462157 - 44462227
Alignment:
Q  791 ggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtg 862  Q
    ||||||| | ||||||||||||| |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  44462157 ggattagacgtgtcccggtgtcggacatgtatcg-tgtctgacaccgacacatatgattaaattgaattgtg 44462227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 791 - 862
Target Start/End: Original strand, 44469690 - 44469760
Alignment:
Q  791 ggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtg 862  Q
    ||||||| | ||||||||||||| |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  44469690 ggattagacgtgtcccggtgtcggacatgtatcg-tgtctgacaccgacacatatgattaaattgaattgtg 44469760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 769 - 882
Target Start/End: Complemental strand, 14134818 - 14134707
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    ||||||| |||||||||| || | ||||| | ||||| |||| || ||| |||||| ||| ||||||||||| |||| |||||| |||||| || | |||    
T  14134818 ctatgaaacacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcg-tgtttgacaccgacatatataattacactgaattatgtg-att 14134721  T
Q  869 ttctcaaattatta 882  Q
    ||||||||||||||    
T  14134720 ttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 813
Target Start/End: Original strand, 15816058 - 15816102
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcg 813  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcg 15816102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 882
Target Start/End: Complemental strand, 3025668 - 3025559
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatttt 870  Q
    |||||||||||||||| || ||||||||| |||| | |||||  ||| ||||| ||||| ||||| ||||  ||| |||||| |||||| || | |||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtc-gtgtccgacactgacacctataattacactgaattatgtg-atttt 3025571  T
Q  871 ctcaaattatta 882  Q
    ||||||||||||    
T  3025570 ctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 14513108 - 14513179
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||| ||| |||| |||| |||||||   ||| ||||||||| ||||| ||||||||||||||||||||    
T  14513108 ctatgaatcacagacaattcttggattaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgaca 14513179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 22652106 - 22652036
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||  |||| ||||| ||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtc-gtgtccgacaccgaca 22652036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 29447574 - 29447504
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| ||  |||||| | ||||||||||||| |||  |||| ||||||||||||||||    
T  29447574 ctatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtc-gtgtctgacaccgaca 29447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 825 - 883
Target Start/End: Complemental strand, 12985456 - 12985399
Alignment:
Q  825 gtgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattat 883  Q
    ||||| |||||||||| |||| ||||||||||||| || | ||||||||||||||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtg-attttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Complemental strand, 39820547 - 39820482
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacac 835  Q
    ||||||||||||||||||||| ||||||| | |||||| |||||| ||| | ||||||||| |||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccgacac 39820482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 826 - 887
Target Start/End: Original strand, 12606825 - 12606885
Alignment:
Q  826 tgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattatcagt 887  Q
    ||||||||||||||| |||| ||||||||||||| |  | ||||||||||||||||| ||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatg-attttctcaaattattagcagt 12606885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 29510231 - 29510303
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || |||||||   ||||||||||||| ||| | ||| ||||| ||||||||||    
T  29510231 acctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgaca 29510303  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 882
Target Start/End: Original strand, 30502330 - 30502439
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatttt 870  Q
    |||||||||| ||| | || ||||||| |||||||| |||||| |||||||||| |||| |||||||||| |||| |||||| ||||||  | | |||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtg-atttt 30502427  T
Q  871 ctcaaattatta 882  Q
    ||||||||||||    
T  30502428 ctcaaattatta 30502439  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 882
Target Start/End: Original strand, 30542673 - 30542782
Alignment:
Q  771 atgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatttt 870  Q
    |||||||||| ||| | || ||||||| |||||||| |||||| |||||||||| |||| |||||||||| |||| |||||| ||||||  | | |||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtg-atttt 30542770  T
Q  871 ctcaaattatta 882  Q
    ||||||||||||    
T  30542771 ctcaaattatta 30542782  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 43565002 - 43564930
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||||||||||||| ||||||| | |||||||| |||| |||  |||| ||||| ||||||||||    
T  43565002 acctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtc-gtgtccgacaccgaca 43564930  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 769 - 882
Target Start/End: Original strand, 8423658 - 8423769
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcatt 868  Q
    |||||| ||||||||||||||  |||||| | ||||||||||||| |||  |||| ||||| ||||||||||  ||| |||||| |||||| || | |||    
T  8423658 ctatgacgcacggacacttctccgattaggcgtgtcccggtgtcggacagctgtc-gtgtccgacaccgacatttataattacactgaattatgtg-att 8423755  T
Q  869 ttctcaaattatta 882  Q
    ||||||||||||||    
T  8423756 ttctcaaattatta 8423769  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 23292926 - 23292996
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| ||| ||||| ||||| ||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccgaca 23292996  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 770 - 840
Target Start/End: Original strand, 30982808 - 30982877
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||  | ||||||| | ||||||||||||| ||| ||||| ||||||||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgaca 30982877  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 22234817 - 22234889
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||| |||||||| ||||||||  ||||| ||||||| ||| ||||| ||||| ||||||||||    
T  22234817 acctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtc-gtgtcagacaccgaca 22234889  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 24613628 - 24613700
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || ||||||| | ||||| ||||||  ||| ||||| ||||||||||||||||    
T  24613628 acctatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtc-gtgtctgacaccgaca 24613700  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 813
Target Start/End: Complemental strand, 37203371 - 37203327
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcg 813  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||    
T  37203371 ctatgaagcacggacacttctcggattagacgtgtcccggtgtcg 37203327  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 824
Target Start/End: Original strand, 715545 - 715600
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcg 715600  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 824
Target Start/End: Original strand, 752871 - 752926
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcg 752926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 24343632 - 24343561
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||| ||  || ||| | ||||||||||||| ||| | ||||||||| ||||||||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgaca 24343561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 824 - 915
Target Start/End: Complemental strand, 33950201 - 33950111
Alignment:
Q  824 ggtgtctgacaccgacagatattattacattgaattgtgggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtc 915  Q
    ||||||||||||||||| |||| |||||||| |||| || | ||||||||||||||||| | |    || ||||||||||||||||| ||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtg-attttctcaaattattagcggcgttgaagtgtcagtgttcgtgttatgtc 33950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 35157925 - 35157995
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||||||||||| ||||||  | ||| ||||||| | ||||||||| ||||| ||||||||||    
T  35157925 ctatgaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtc-gtgtcagacaccgaca 35157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 848 - 909
Target Start/End: Complemental strand, 12077869 - 12077809
Alignment:
Q  848 ttacattgaattgtgggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 909  Q
    |||||||||||| || | ||||||||||||||||| |||||  || ||||||||||||||||    
T  12077869 ttacattgaattatgtg-attttctcaaattattaacagtattgacgtgtcagtgttcgtgt 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 835
Target Start/End: Original strand, 14465006 - 14465070
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacac 835  Q
    ||||||||||||||||| ||  |||||| | |||||| |||||||||| ||||| |||||||||||    
T  14465006 tatgaagcacggacactcctcagattagacgtgtcccagtgtcgaacacgtgtc-gtgtctgacac 14465070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 835
Target Start/End: Complemental strand, 17876288 - 17876219
Alignment:
Q  766 cacctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacac 835  Q
    |||||||||||||| |||||| || |||||||   ||||| ||||||| ||| | |||||||||||||||    
T  17876288 cacctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacac 17876219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 881
Target Start/End: Original strand, 46715416 - 46715524
Alignment:
Q  772 tgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcattttc 871  Q
    ||||||||| ||||| || ||||||| ||||| ||||||||| ||| | | | ||||| ||||| |||| |||| | ||||||||||| || | ||| ||    
T  46715416 tgaagcacgaacactcctcggattagacatgtgccggtgtcggacacgcggcagtgtccgacacagacaaatataactacattgaattatgtg-attgtc 46715514  T
Q  872 tcaaattatt 881  Q
    ||||||||||    
T  46715515 tcaaattatt 46715524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 53381528 - 53381601
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    |||||||||||||||||||| || |||||||   ||||||||||||| | | | ||| ||||| ||||||||||    
T  53381528 acctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgaca 53381601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 769 - 824
Target Start/End: Complemental strand, 241724 - 241669
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||| ||| ||||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcg 241669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 824
Target Start/End: Original strand, 4821 - 4876
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcg 824  Q
    |||||||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcg 4876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 3058 - 2988
Alignment:
Q  769 ctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||| |||||||||||| || ||||||| | ||| ||||||||||||| ||||| |||||||| |||||||    
T  3058 ctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtc-gtgtctgataccgaca 2988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 887
Target Start/End: Original strand, 403 - 518
Alignment:
Q  770 tatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtgggcattt 869  Q
    ||||||||||||||||| || |||||||   ||||||||||||| ||| | ||| ||||| ||||||||||  | | |||||| |||||| || | ||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacacttgtaattacactgaattttgtg-attt 500  T
Q  870 tctcaaattattatcagt 887  Q
    | ||||||||||| ||||    
T  501 tttcaaattattagcagt 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 840
Target Start/End: Complemental strand, 71857 - 71785
Alignment:
Q  767 acctatgaagcacggacacttctgggattagccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgaca 840  Q
    ||||||||||||| |||||| || ||||||| | ||||||||||||| ||| ||||  ||||| ||||||||||    
T  71857 acctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgt-tgtgtccgacaccgaca 71785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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