View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112-Insertion-24 (Length: 165)

Name: NF3112-Insertion-24
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112-Insertion-24
NF3112-Insertion-24
[»] chr4 (7 HSPs)
chr4 (8-94)||(39592581-39592667)
chr4 (8-147)||(41542382-41542521)
chr4 (8-87)||(52703134-52703213)
chr4 (8-161)||(7585510-7585663)
chr4 (9-64)||(24156635-24156690)
chr4 (101-156)||(52704502-52704557)
chr4 (8-64)||(20861219-20861275)
[»] chr2 (3 HSPs)
chr2 (8-156)||(15502036-15502185)
chr2 (45-152)||(32267368-32267477)
chr2 (119-154)||(7575777-7575812)
[»] chr3 (2 HSPs)
chr3 (8-154)||(47158701-47158847)
chr3 (12-55)||(41419956-41419999)
[»] chr5 (1 HSPs)
chr5 (8-137)||(12602400-12602528)
[»] chr1 (2 HSPs)
chr1 (9-72)||(23204428-23204491)
chr1 (105-155)||(9452429-9452479)
[»] chr6 (2 HSPs)
chr6 (102-156)||(6180452-6180506)
chr6 (12-80)||(13025588-13025656)
[»] chr8 (2 HSPs)
chr8 (105-154)||(26706593-26706642)
chr8 (8-156)||(40736534-40736680)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 8e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 39592581 - 39592667
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccata 94  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  39592581 aagagaaggtaaccagtgtgcagatttcttggccaagctaggagcttcgaatcatgtggatttgacgattcactccaaccccccata 39592667  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 41542521 - 41542382
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccataaggctgtctccct 107  Q
    ||||||||| |||||||| || |||||||||| |||||| || ||||||||||||||||||||  ||||||||| || ||||| | | |||   ||||||    
T  41542521 aagagaaggaaaccagtgcgctgatttcttggccaagcttggtgcttcgaatgatgtggatttagctattcacttcaccccccaagagggcctcctccct 41542422  T
Q  108 ttgcagcagtcggatgaattaggaacgcttttcttaaggc 147  Q
    ||||   ||||||||||  |||||||||||||||||||||    
T  41542421 ttgccatagtcggatgagctaggaacgcttttcttaaggc 41542382  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 52703134 - 52703213
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaacc 87  Q
    ||||||||| ||| | ||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  52703134 aagagaagggaactaatgtgttgatttctttgtcaagttaggagcttcgaatgatgtggatttgaccattcactccaacc 52703213  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 7585663 - 7585510
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccata-aggctgtctccc 106  Q
    ||||||||| |||||||||||||||||| ||| |||| | |||||||| |||||||| ||||||   ||||||||| |||| ||| |  |||| |  |||    
T  7585663 aagagaaggaaaccagtgtgcagatttcatggccaagatcggagcttccaatgatgttgatttgctaattcactcccaccctccagacgggctct-accc 7585565  T
Q  107 tttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagttttgcttt 161  Q
    ||||  |||||||||||||||||||||||| || || ||| ||||||||| ||||    
T  7585564 tttgttgcagtcggatgaattaggaacgctctttttgaggtgttagtttttcttt 7585510  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 24156690 - 24156635
Alignment:
Q  9 agagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgt 64  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||| ||||||||    
T  24156690 agagaaggtaaccaatgtgcagatttcatggccaagctcggagcttctaatgatgt 24156635  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 52704502 - 52704557
Alignment:
Q  101 tctccctttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagtttt 156  Q
    ||||||||||| ||||| ||| ||||||||||||| ||||||||| ||||||||||    
T  52704502 tctccctttgctgcagttggacgaattaggaacgcctttcttaagacgttagtttt 52704557  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 20861219 - 20861275
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgt 64  Q
    |||||||||||| |||||||| || ||| ||| |||||| |||||||||||| ||||    
T  20861219 aagagaaggtaatcagtgtgcggacttcatggccaagcttggagcttcgaataatgt 20861275  T

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Target: chr2 (Bit Score: 70; Significance: 7e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 15502036 - 15502185
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccataaggctgtctccct 107  Q
    ||||||||| ||||||||||  |||||||| | ||||||||||||||||||||||| |||  |||| |||||||||||||||||| |||||  |||||||    
T  15502036 aagagaagggaaccagtgtgtcgatttctttgccaagctaggagcttcgaatgatgcggaactgaccattcactccaaccccccagaaggccttctccct 15502135  T
Q  108 t-tgcagcagtcggatgaattaggaacgcttttcttaaggcgttagtttt 156  Q
    | | | ||||| |||||| |||||||| | ||||||||||||||||||||    
T  15502136 tctactgcagttggatgagttaggaacacctttcttaaggcgttagtttt 15502185  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 32267477 - 32267368
Alignment:
Q  45 ctaggagcttcgaatgatgtggatttgactattcactccaacccc--ccataaggctgtctccctttgcagcagtcggatgaattaggaacgcttttctt 142  Q
    ||||||||||| |||||||  ||| |||||| ||||||| || ||  ||| | |||  ||| ||||||| ||| |||||||||||| |||||||||||||    
T  32267477 ctaggagcttcaaatgatgatgatctgactaatcactcccacaccatccagagggccttcttcctttgctgcaatcggatgaattatgaacgcttttctt 32267378  T
Q  143 aaggcgttag 152  Q
    ||||||||||    
T  32267377 aaggcgttag 32267368  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 7575812 - 7575777
Alignment:
Q  119 ggatgaattaggaacgcttttcttaaggcgttagtt 154  Q
    ||||||| ||||||||||||||||||||| ||||||    
T  7575812 ggatgaagtaggaacgcttttcttaaggctttagtt 7575777  T

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Target: chr3 (Bit Score: 43; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 47158847 - 47158701
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccataaggctgtctccct 107  Q
    ||||||||| || || |||||||||||| ||| |||  | |||||||| || ||||| ||||||   ||||||||| |||| ||| | ||    ||||||    
T  47158847 aagagaaggcaatcaatgtgcagatttcatggccaaaattggagcttctaacgatgttgatttgttaattcactcccaccctccagacggactcctccct 47158748  T
Q  108 ttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagtt 154  Q
    |||| |||||||||||||||||||||||| || || |||||||||||    
T  47158747 ttgctgcagtcggatgaattaggaacgctctttttgaggcgttagtt 47158701  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 41419956 - 41419999
Alignment:
Q  12 gaaggtaaccagtgtgcagatttcttggtcaagctaggagcttc 55  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||    
T  41419956 gaaggtaactagtgtgcagatttcctggccaagctaggagcttc 41419999  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 12602528 - 12602400
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccataaggctgtctccct 107  Q
    |||||||||||||||||| || |||||||| | ||| || | |||||| |||||||| | |||||||||||||||||| || ||| |  ||  |||||||    
T  12602528 aagagaaggtaaccagtgcgcggatttctttgccaaacttgaagcttctaatgatgttgttttgactattcactccaaacctccagagagccttctccct 12602429  T
Q  108 ttgcagcagtcggatgaattaggaacgctt 137  Q
    |||| ||| |  ||||||||||||||||||    
T  12602428 ttgctgcact-tgatgaattaggaacgctt 12602400  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 23204428 - 23204491
Alignment:
Q  9 agagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttga 72  Q
    ||||||||||| |||||||| |||||| |||| |||||| ||||||||| ||||||||| ||||    
T  23204428 agagaaggtaatcagtgtgcggatttcatggttaagctatgagcttcgactgatgtggaattga 23204491  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 9452429 - 9452479
Alignment:
Q  105 cctttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagttt 155  Q
    ||||||| ||| |||||||||||||||||||| || || ||||||||||||    
T  9452429 cctttgctgcaatcggatgaattaggaacgctctttttgaggcgttagttt 9452479  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 6180452 - 6180506
Alignment:
Q  102 ctccctttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagtttt 156  Q
    |||||||||| |||||| ||||||||||||||||| || || |||||||||||||    
T  6180452 ctccctttgctgcagtcagatgaattaggaacgctctttttgaggcgttagtttt 6180506  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 13025656 - 13025588
Alignment:
Q  12 gaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcac 80  Q
    |||||||| |||||||| |||| ||||| |||||| |||||||||||| ||| || ||| || ||||||    
T  13025656 gaaggtaatcagtgtgccgattgcttggccaagcttggagcttcgaataatgaggcttttacaattcac 13025588  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 26706642 - 26706593
Alignment:
Q  105 cctttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagtt 154  Q
    ||||||| |||||||||||||||||||||||| || || |||||||||||    
T  26706642 cctttgctgcagtcggatgaattaggaacgctctttttgaggcgttagtt 26706593  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 40736680 - 40736534
Alignment:
Q  8 aagagaaggtaaccagtgtgcagatttcttggtcaagctaggagcttcgaatgatgtggatttgactattcactccaaccccccataaggctgtctccct 107  Q
    ||||||||| || |||||||||  |||| ||| |||  | |||||||| |||||||| ||||||   ||||||||| |||| ||| | ||    || |||    
T  40736680 aagagaaggcaatcagtgtgca--tttcatggccaaaatcggagcttctaatgatgttgatttgttaattcactcccaccctccagatgggctccttcct 40736583  T
Q  108 ttgcagcagtcggatgaattaggaacgcttttcttaaggcgttagtttt 156  Q
    |||| |||||||||||||||||||||| | || || |||||||||||||    
T  40736582 ttgctgcagtcggatgaattaggaacgatctttttgaggcgttagtttt 40736534  T

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