View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112-Insertion-26 (Length: 86)

Name: NF3112-Insertion-26
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112-Insertion-26
NF3112-Insertion-26
[»] chr2 (1 HSPs)
chr2 (7-86)||(44800227-44800306)
[»] chr7 (2 HSPs)
chr7 (7-82)||(37478199-37478274)
chr7 (7-82)||(21886870-21886945)
[»] chr5 (2 HSPs)
chr5 (7-82)||(1685450-1685525)
chr5 (9-82)||(39954354-39954427)
[»] chr1 (1 HSPs)
chr1 (7-82)||(52037791-52037866)
[»] chr3 (1 HSPs)
chr3 (7-82)||(41053374-41053449)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 44800227 - 44800306
Alignment:
Q  7 agttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggtatag 86  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44800227 agttggaattggatcaagctgcttgagcgttgttcgatacacaacaattggtgaaatacttctctgcaatcgcggtatag 44800306  T

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Target: chr7 (Bit Score: 64; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 37478274 - 37478199
Alignment:
Q  7 agttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggt 82  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  37478274 agttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggt 37478199  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 21886945 - 21886870
Alignment:
Q  7 agttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggt 82  Q
    |||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  21886945 agttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggt 21886870  T

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Target: chr5 (Bit Score: 64; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 1685525 - 1685450
Alignment:
Q  7 agttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggt 82  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  1685525 agttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggt 1685450  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 39954354 - 39954427
Alignment:
Q  9 ttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggt 82  Q
    ||||||||||||||| ||||||||| | |||||||||||||||| || ||||||||||||||||||||||||||    
T  39954354 ttggaattggatcaaactgcttgagtgttgtccgatacacaacagttagtgaaatacttctctgcaatcgcggt 39954427  T

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Target: chr1 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 52037866 - 52037791
Alignment:
Q  7 agttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggt 82  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  52037866 agttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggt 52037791  T

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Target: chr3 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 41053374 - 41053449
Alignment:
Q  7 agttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggt 82  Q
    |||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||| |||| |||||||||    
T  41053374 agttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttatctgtaatcgcggt 41053449  T

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