View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112-Insertion-3 (Length: 799)
Name: NF3112-Insertion-3
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Complemental strand, 51575314 - 51574737
Alignment:
| Q |
8 |
aatactcggaacttgaacatgggtctacaccaagaaatcaatgggtggatcgtatcggaacctaactattcaaattcttctcctcacacgtttgctattg |
107 |
Q |
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| T |
51575314 |
aatactcggaactcaaacatgggtctacaccaagaaatcaatgggtggatcgtatcggaacctgactattcaaattcttctcctcacacgtttggtattg |
51575215 |
T |
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| Q |
108 |
atggaaatattatcgaggcaagtccaaatgccagggtggcttcatctacaccaatcgctaatgtcgaacccaactcaaattttgtgaatgaaccattgcc |
207 |
Q |
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| T |
51575214 |
atggaaatattatcgaggcaagtccaaatgccagggtggtttcatctacaccaatcgctaatgtcgaacccaactcaaattttgtgaatgaaccattgcc |
51575115 |
T |
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| Q |
208 |
tagaaattttagttttcctgatccgtttcttcttgcttctcagttttttggtatgtactctctcttgagtttttgtgagtcaatgtatacatttgaaaag |
307 |
Q |
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| T |
51575114 |
tagaaattttagttttcctgatccgtctcttcttgcttctcagttttttggtatgtactctctcttgagtttttgtgagtcaatgtatacatttgaaaaa |
51575015 |
T |
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| Q |
308 |
catgttttcttaacccatctttaagttgttacatatacaaaatttctcaagtaacaaagcttagtttgggttaatcattattgcaggtaaagattcatct |
407 |
Q |
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| T |
51575014 |
catgttttcttaacccatctttaagttgttacatatacaaaatttctcaagtaacaaagcttagtttgggttaatcattattgcaggtaaagattcatct |
51574915 |
T |
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| Q |
408 |
ccttgtttaagtggtgtatcggacaactatcatggttcaccttcctaggtaagaaactatctcactcctccgtccttaaaattttgccttctgtcgttgt |
507 |
Q |
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| T |
51574914 |
ccttgtttaagtggtgtatcggacgactatcatggttcaccttcctaggtaagaaactatctcactcctccgtccataaaattttgccttctgtcgtagt |
51574815 |
T |
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| Q |
508 |
aataattattgccatggttattctatatttgctatggcttaatatgtatctttgaccatcaatgtaattaaaatgtta |
585 |
Q |
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| T |
51574814 |
aataattattgccatggttcttctatatttgctatggcttaatatgtatctttgaccatgaatgtaattaaaatgtta |
51574737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 607 - 799
Target Start/End: Complemental strand, 51574713 - 51574521
Alignment:
| Q |
607 |
aactctttggttcctaagggaaggctccctagtaatatggaatccgatcgagacgtaagtaaagtctgatcaataattgttaaaactataaattgaactc |
706 |
Q |
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| T |
51574713 |
aactctttggttcctaagggaaggctccctagtaatatggaatccgatcgagacgtaagtaaagtctgatcaagaattgttaaaactataaattgaactt |
51574614 |
T |
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| Q |
707 |
agatttctcttaaatgtttcatccttagttttttcttttaattatcccattttgcatttgattggctacatatactcgtgtcatcatgtagag |
799 |
Q |
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| T |
51574613 |
agatttctgttgaaagtttcatccttagttttttctcttaattatcccattttgcatttgattggctacatatactcttgtcatcatgtagag |
51574521 |
T |
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