View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112-Insertion-4 (Length: 777)
Name: NF3112-Insertion-4
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112-Insertion-4 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 185 - 777
Target Start/End: Complemental strand, 13795272 - 13794682
Alignment:
| Q |
185 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13795272 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcagctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
13795173 |
T |
|
| Q |
285 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13795172 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
13795073 |
T |
|
| Q |
385 |
gagagatctttcatttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13795072 |
gagagatctttcatttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
13794973 |
T |
|
| Q |
485 |
caacgagtttatttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaaca |
584 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13794972 |
caacgagtttacttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaaca |
13794873 |
T |
|
| Q |
585 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13794872 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
13794773 |
T |
|
| Q |
685 |
aatcttgttttattttcaaaattacctttgctattgtcactaaatttgtttgnnnnnnnnnncttgtattggattaggttctctgtttgatga |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13794772 |
aatcttgttttattttcaaaattacctttgctattgtcactaaatttgtttg--ttttttttcttgtattggattaggttctctgtttgatga |
13794682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 13795862 - 13795677
Alignment:
| Q |
8 |
gaaacaagaaagacggtttttcattgaatatgagttatttgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13795862 |
gaaacaagaaagacggtttttcattgaatatgagttatttgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttc |
13795763 |
T |
|
| Q |
108 |
aaatcccactgcacgatgatgttgtagtgcgcgatttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaat |
193 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13795762 |
aaatcccacggcacgatgatgttgtagtgcgcgatttgacatgctaacaacttatggcttagcatttaagtcttgataattaaaat |
13795677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 141 - 373
Target Start/End: Original strand, 16025213 - 16025445
Alignment:
| Q |
141 |
atttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatac |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | | ||||| |||| ||||||||||| || ||||| | ||||||||||| ||| | ||| | || ||| |
|
|
| T |
16025213 |
atttgacaatctaacaacttatggcttagcaatcaggtcttggtaactaaaatatgagcatcagttttattgtagaaagaacatcatacattaactgtac |
16025312 |
T |
|
| Q |
241 |
atgcactatgagctgcatcaatcatgatataatactcgagtaaattcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatct |
340 |
Q |
| |
|
||||| |||| || ||||||| ||||| ||| |||| || || |||||||||||||||||||||||||||| ||||| ||||||||| || ||| |
|
|
| T |
16025313 |
ccacactacaggctggatgaatcatgttataacacttgagtgaagtctaggagagaaaacatcacatagaagtgaaaatctagtttgtaacacgatgtct |
16025412 |
T |
|
| Q |
341 |
taataattcgacaactgatagttgatggcacaa |
373 |
Q |
| |
|
| |||||| ||||||| |||||||||||||| |
|
|
| T |
16025413 |
ctagaattcgtcaactgacagttgatggcacaa |
16025445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 14366358 - 14366254
Alignment:
| Q |
8 |
gaaacaagaaagacggtttttcattgaatatgagttatt-tgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgtt |
106 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||| | | ||||| | |||||||||||||||||||||||| ||| ||| ||| |||||||||||||| |
|
|
| T |
14366358 |
gaaacaagaaagccagattttcattgaatatgagaaagtgtgaaagcgatcattctcatcaatgttatcaatcatgaatcgcgagaaattgcaatttgtt |
14366259 |
T |
|
| Q |
107 |
caaat |
111 |
Q |
| |
|
||||| |
|
|
| T |
14366258 |
caaat |
14366254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University