View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112-Insertion-7 (Length: 459)

Name: NF3112-Insertion-7
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112-Insertion-7
NF3112-Insertion-7
[»] chr1 (1 HSPs)
chr1 (7-459)||(43666111-43666574)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 459
Target Start/End: Complemental strand, 43666574 - 43666111
Alignment:
Q  7 cacgcacccctcactttaataaatgaatcatttaacccgtattttcaggaaa----ttaa--aaat--agaataaaaatgagcattttctttaataaatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||  ||||  | |||||||||||||||||| |||||||||||    
T  43666574 cacgcacccctcactttaataaatgaatcatttaacccgtattttcaggatacttattaaggaaattaaaaataaaaatgagcattttatttaataaatt 43666475  T
Q  99 tcacttgctcaaacaaataagtccagtcccaccacacacatatttacctcatccgtaattgtccaatctctctccaaaactcacatcactcatagattct 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  43666474 tcacttgctcaaacaaataagtccagtcccaccacacacatatttacctcatccgtaattatccaatctctctctaaaactcacatcactcatagattct 43666375  T
Q  199 tccatt-----acatgcaacaactctctccctccatttcattataaataacttccatcacaacacaatctaaaacg------caaacacaaacacacact 287  Q
    ||||||     |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  43666374 tccattacattacatgcaacaa--ctctccctccattccattataaataacttccatcacaacacaatctaaaacgcaaactcaaacacaaacacacact 43666277  T
Q  288 cgatgtgtcatcactatggagcctctctcttccactaaacaaaatcatnnnnnnnnnnnnnnnnnnnctctaactaaaccttctcttcatgttgaatctc 387  Q
    |  ||||||||||||||||||||| |||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||    
T  43666276 cattgtgtcatcactatggagcctttctcttccactaaacaaaatcat------aacaacaacaacactctaactaaaccttctcttcatgttgaatctc 43666183  T
Q  388 caccacttgaaccaagtcctctccgtaagatcatagtcgttgcttccatagcagcaggtgttcagtttggct 459  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43666182 caccacttgaacctagtcctctccgtaagatcatagtcgttgcttccatagcagcaggtgttcagtttggct 43666111  T

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