View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112-Insertion-8 (Length: 430)
Name: NF3112-Insertion-8
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112-Insertion-8 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 42390931 - 42390667
Alignment:
| Q |
27 |
ctccaacaccgtgcatgaccttcctccgcctctgtaaccaccatgccttcatctcatccttcctccgatctaattctccaccatctctcttcctccgatt |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
42390931 |
ctccaccaccgtgcatgaccttcctccgccgctgtaaccaccatgccttcatctcatccttcctccgatctaatcctccaccgtctatcttcctccgatt |
42390832 |
T |
|
| Q |
127 |
acgaaatcaagcttaaagctatccgcgaaattaagaatcaaattatcagtaaccgtaccaagaaactctcgtacatcaaactcgacaccgttcc------ |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
42390831 |
acgaaatcaagctcaaagctatccgcgaaattaagaatcaaatcatcggtaaccgcaccaagaaactctcttacatcaaactcggcgccgttccctccgt |
42390732 |
T |
|
| Q |
221 |
cgccgatgctctcgctactgcaaactccgattccgatttcggttctagtcttatcgttcagtccg |
285 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
42390731 |
cgccgatgctctcgcaactgcaaattccgattccgatttcggttccaaccttatcgttcagtccg |
42390667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 301 - 430
Target Start/End: Complemental strand, 43235636 - 43235507
Alignment:
| Q |
301 |
agcggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagctgtgttgaatagaatgagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
43235636 |
agcggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagttgtgctgaatagaatgagg |
43235537 |
T |
|
| Q |
401 |
agaacattttaatcctagcccttagtttta |
430 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
43235536 |
agaacattttaatcctaacccttagtttta |
43235507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 313 - 430
Target Start/End: Original strand, 43235859 - 43235973
Alignment:
| Q |
313 |
ggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagctgtgttgaatagaatgaggagaacattttaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
43235859 |
ggcggtggagagatgaggttgttgttgcagcaggaggtaa---atgcgggaagaactaagtgtttgagttgtgtggaatagaatgaggagaacattttaa |
43235955 |
T |
|
| Q |
413 |
tcctagcccttagtttta |
430 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
43235956 |
tcctagcccttggtttta |
43235973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 28548223 - 28548275
Alignment:
| Q |
317 |
gtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
369 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
28548223 |
gtggagagatgaggttgttattgcagcaggaggtggtgaaagggggaagaaca |
28548275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 28547904 - 28547841
Alignment:
| Q |
303 |
cggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
369 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
28547904 |
cggaagtggcggcggtggagagatgagattgtcgttgcagcaaga---ggtggaagggggaagaaca |
28547841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 46295517 - 46295570
Alignment:
| Q |
313 |
ggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
369 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
46295517 |
ggcggtggagagatgaggttggtgttgcggcagga---ggtggaagggggaagaaca |
46295570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 3466815 - 3466735
Alignment:
| Q |
303 |
cggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagctgtgt |
386 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
3466815 |
cggaagtggcggcggtggagagatgatgttgttgttgcggtagga---ggtggaagggggaagaacagagtaattgagttgtgt |
3466735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 9482856 - 9482803
Alignment:
| Q |
313 |
ggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
369 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
9482856 |
ggcggtggagagatgaggttggtgttgtggcaggag---gtggaagggggaagaaca |
9482803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University