View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112-Insertion-9 (Length: 470)
Name: NF3112-Insertion-9
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 46032160 - 46032566
Alignment:
| Q |
8 |
gatatatctgtaaactcaatatctttgtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctc |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46032160 |
gatatatctgtaaactcaatctctttgtcgatatcagcaactcca---tttcttagtgtaatgaattcgtttcctttcaacagttcttcttttccctctc |
46032256 |
T |
|
| Q |
108 |
ttggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctc |
207 |
Q |
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| T |
46032257 |
ttggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctc |
46032356 |
T |
|
| Q |
208 |
ttccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggtacatctccctcagctttgatggtggacttggtgaaaattctgttt |
307 |
Q |
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| T |
46032357 |
ttccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggttcatctccctcagctttgatggtggacttagtgaaaattctgttt |
46032456 |
T |
|
| Q |
308 |
ggcaatttgttcatgaaacagaattgcaaacgtctccttccaaatgtgttggacataagcgtcaatccacaactaaattccaaacaaaaacaagtatgaa |
407 |
Q |
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| T |
46032457 |
ggcaatttgttcatgaaacagaattgcaaacgtctccttccaaatgtgttggacataagcgtcaatccacaactaaattccaaacaaaaacaagtatgaa |
46032556 |
T |
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| Q |
408 |
tataattaat |
417 |
Q |
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|||||||||| |
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| T |
46032557 |
tataattaat |
46032566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 46019488 - 46019910
Alignment:
| Q |
8 |
gatatatctgtaaactcaatatctttgtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctc |
107 |
Q |
| |
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|||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||| ||| |||||||||| |||| | ||||||| ||| |
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| T |
46019488 |
gatatatctgtaaactcaatctctatgttgatatcagcaactcca---tttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactc |
46019584 |
T |
|
| Q |
108 |
ttggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctc |
207 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
46019585 |
ttggaggtacaatttgagtattaaactcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatcgaggaaccttc |
46019684 |
T |
|
| Q |
208 |
ttccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggtacatctccctcagctttgatggtggacttggtgaaaattctgttt |
307 |
Q |
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|||| |||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||| |||| | ||||||||| | | |
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| T |
46019685 |
ttccctgactatgcgttgctgatttccagcatcacgcagttcaatttgaagcggttcatctccctcagctttgatttcggacattgtgaaaattgtttca |
46019784 |
T |
|
| Q |
308 |
ggcaatttgttcatgaaacagaattgcaaacgtctccttc---caaatgtgttggaca------taagcgtcaatccacaactaaattccaaacaaaaac |
398 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| | || ||||||||| || |||| ||||||||||| ||||||| ||||| |||| |
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| T |
46019785 |
ggcattttgttcatgaaacacaattgcaaacgtctcctcctctcatatgtgttggccaactcgttaagggtcaatccacagctaaattagaaacacaaac |
46019884 |
T |
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| Q |
399 |
aagtatgaatataattaattttgctt |
424 |
Q |
| |
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|| ||| |||| |||| ||||||||| |
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|
| T |
46019885 |
aactatcaatacaattgattttgctt |
46019910 |
T |
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