View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112R-Insertion-10 (Length: 285)
Name: NF3112R-Insertion-10
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112R-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 36199555 - 36199278
Alignment:
| Q |
8 |
acatatatcttatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtc |
107 |
Q |
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| T |
36199555 |
acatatatcttatatgttatcaataaactgaaagttgacaagtttttgatgccattggaattaaggatagttccttttctatttgaggttgttctttgtc |
36199456 |
T |
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| Q |
108 |
actccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaata |
207 |
Q |
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| T |
36199455 |
actccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcccgaata |
36199356 |
T |
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| Q |
208 |
gtgcaagttctaagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcctcct |
285 |
Q |
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| T |
36199355 |
gtgcaagttctaagatataatgaaagaaattgtggagtggattttggatccacccaattttcttgttcttttcctcct |
36199278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 28449405 - 28449665
Alignment:
| Q |
18 |
tatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatatt |
117 |
Q |
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| T |
28449405 |
tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc |
28449504 |
T |
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| Q |
118 |
gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttc |
217 |
Q |
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| T |
28449505 |
atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtcattttgtaggtctacaaatgcaaagtcccgaatagtgcaagttg |
28449604 |
T |
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| Q |
218 |
taagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttt |
278 |
Q |
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| T |
28449605 |
taagatgtaatgagaggcattgtggagcagatgttgggtttacccaactttgttgtccttt |
28449665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 12636006 - 12635951
Alignment:
| Q |
115 |
attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataag |
170 |
Q |
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| T |
12636006 |
attgtcatggtttgtaaaactcttgcattcttcaaaatataccttgctagcataag |
12635951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 48675085 - 48675344
Alignment:
| Q |
23 |
gttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcat |
122 |
Q |
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| T |
48675085 |
gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat |
48675184 |
T |
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| Q |
123 |
agtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttctaaga |
222 |
Q |
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| T |
48675185 |
agtttgtaaaacttttgcattatttagaatatatcttgctaacataatattatgctgtaggtcactaaaggtaaagtcccgaatagtgcaggttctaaga |
48675284 |
T |
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| Q |
223 |
tataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcct |
282 |
Q |
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| T |
48675285 |
gataattgaaggcattgtggagggaacttagggtccacccaactttcttgttcttgtcct |
48675344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 41662527 - 41662600
Alignment:
| Q |
110 |
tccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtagg |
183 |
Q |
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| T |
41662527 |
tccagattttcatggtttgtaaaactcttgcattcttcaaaacataccttgctagcataagctcgtcttgtagg |
41662600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 410600 - 410494
Alignment:
| Q |
118 |
gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaag |
214 |
Q |
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| T |
410600 |
gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaag |
410501 |
T |
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| Q |
215 |
ttctaag |
221 |
Q |
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| T |
410500 |
ttgtaag |
410494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 996740 - 996795
Alignment:
| Q |
111 |
ccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaaca |
166 |
Q |
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| T |
996740 |
ccatattttcatggtttgtaaaagtcttgcattctttagaatatatcttgctaaca |
996795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 821491 - 821405
Alignment:
| Q |
83 |
tttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa |
169 |
Q |
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| T |
821491 |
tttctatttcagattgtttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa |
821405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 973725 - 973785
Alignment:
| Q |
109 |
ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa |
169 |
Q |
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| T |
973725 |
ctccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataa |
973785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 1403859 - 1403805
Alignment:
| Q |
115 |
attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa |
169 |
Q |
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| T |
1403859 |
attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataa |
1403805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 43360065 - 43360019
Alignment:
| Q |
119 |
tcatagtttgtaaaactcttgcattatttagaatatatcttgctaac |
165 |
Q |
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| T |
43360065 |
tcatagtttgcaaaactcttgcattattaagaatgtatgttgctaac |
43360019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 45810203 - 45810257
Alignment:
| Q |
115 |
attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa |
169 |
Q |
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| T |
45810203 |
attgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataa |
45810257 |
T |
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