View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112R-Insertion-2 (Length: 960)
Name: NF3112R-Insertion-2
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112R-Insertion-2 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 778; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 9 - 960
Target Start/End: Original strand, 26392273 - 26393210
Alignment:
| Q |
9 |
ggttactctcaaaatcaacctctgcagagcacatgtagacaccaacttgcccttggatgatctcttttattcttgttctaaaattattgaagctctgtct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26392273 |
ggttactctcaaaatcaacctctgcagagcacatgtagacaccagtttgcccttggatgatctcttttattcttgttctaaaattattgaagctctgtct |
26392372 |
T |
|
| Q |
109 |
tccaaatgctctgaaactcactccgaatgccactgattcatcggtccctgaatggaccattgcaaccgtgaccacctgggaatccaatgggtcgacctcc |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26392373 |
tccaaatgctctgaagctcactccgaatgccactgattcatcggtccctgaatggaccattgcaaccgtgaccacctgggaatccaatgggtcgacctcc |
26392472 |
T |
|
| Q |
209 |
cttgacactatttgttgcaggcttacgattgatgaagcagccgctaaaaccggattgaggcattgttgatccctttcgattttgacaagaaagcttccgc |
308 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26392473 |
cttgacactaattgttgcaggcttacgattgatgaagcaaccgctaaaaccggattgaggcattgttgatccctttcgattttgacaagaaagcttccgc |
26392572 |
T |
|
| Q |
309 |
agcctgatcctaattccccgggccgcgatgcgactacaccttgggggagaaatttctgtggcattaaatgaatgccaaagattgcctccactttgttgag |
408 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26392573 |
agcctgctcctaattcgacgggccgcgatgcgactacaccttgggggagaaatttatgtggcattaaatgaatgccaaagattgcctccactttgttgag |
26392672 |
T |
|
| Q |
409 |
cacattctcttcaaccatcagcttggctccggtgccttttttcctcggcaggttggaatataagaacaacagtagcttgcatgtgaatgatttagttttc |
508 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26392673 |
cacattctcttcaaccatcagcttcgctccggtgcc-tttttcctcggcaggttggaatataagaacaacagtagcttgcatgtgaatgatttagttttc |
26392771 |
T |
|
| Q |
509 |
aatggaagattttccataaagctcatttaaaaaatttccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaag |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26392772 |
aatggaagattttccataaagctcatttaaaaaatttccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaag |
26392871 |
T |
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| Q |
609 |
catcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactttgctcttatgatcccaatcaacaagttcttgtgggcagggaagtatatac |
708 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
26392872 |
catcacaacatgggcatcgtgtgcacaagcatgtattttcccgtctactttgctcttatgatcccaatcaacaagttcctgtgggca-ggaagtatatac |
26392970 |
T |
|
| Q |
709 |
cagattaaagatttgacaggaacaaacatattgtgctatattttcttggtagcaattactaatatcggttgttgtcattaccattaccacgcccttctat |
808 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
26392971 |
cagattaaagatttgacaggaacaaacatattgtgctatattttcttggtagcaattactaatatcggttgttgtcatcaccattaccacg-ccttctat |
26393069 |
T |
|
| Q |
809 |
aaacactttctctcccgaagaatacattggggttggacccagttattatcccctcatcattagttgctataaaaacttttaatcttcaaaaccaaccccc |
908 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| | |||||| |
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| T |
26393070 |
aaacactttctct-ccgaagaatacatt-gggttggacccagttatta-cccctcatcattag-tgctataaaaacttt--atcttcaaa--ccaccccc |
26393161 |
T |
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| Q |
909 |
taacacaaaacgcgcacgcgcatgcaagttgagtacacacagtgcatgtata |
960 |
Q |
| |
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| |||| | || |||||| || |||||| ||||||||||||||||||||||| |
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| T |
26393162 |
t-acac-acacacgcacgtgcgtgcaag-tgagtacacacagtgcatgtata |
26393210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 446 - 767
Target Start/End: Complemental strand, 26264567 - 26264248
Alignment:
| Q |
446 |
tttttcctcggcaggttggaatataagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaattt |
545 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
26264567 |
tttttcctccgctggttggaatataagaacaacagtagcctgcatgcgaagtatttagttttcaatggaagattgcccataaagctcatttaaatttttt |
26264468 |
T |
|
| Q |
546 |
ccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcatt |
645 |
Q |
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| T |
26264467 |
gcaattccactttacctttaatttatttttcatttcttgcagtatctttgcagcaccgagaagcatcgcaacatgggcatcgtgtgcacaagcatgcatt |
26264368 |
T |
|
| Q |
646 |
ttcccgtctactttgctcttatgatcccaatcaacaagttcttgtgggcagggaagtatataccagattaaagatttgacaggaacaaacatattgtgct |
745 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||| ||||||||| || ||| || |
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| T |
26264367 |
ttcccatctactttgctcttatgatcccaatcaacaagttcctgtgggca-ggaagtatagaccagattaaggatttgacgggaacaaacttactgtcct |
26264269 |
T |
|
| Q |
746 |
atattttcttggtagcaattac |
767 |
Q |
| |
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||| |||||||| ||||||||| |
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| T |
26264268 |
ata-tttcttggaagcaattac |
26264248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 543 - 680
Target Start/End: Original strand, 31838645 - 31838782
Alignment:
| Q |
543 |
tttccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgc |
642 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||| |||||||||||| |
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| T |
31838645 |
tttccaattccactttacctttaacttgtctttcatttcttgcagtatctttgcagcaccaagaagcatcgccacatgtgcatcgtgcgcacaagcatgc |
31838744 |
T |
|
| Q |
643 |
attttcccgtctactttgctcttatgatcccaatcaac |
680 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
31838745 |
atttttccgtctactttgcttttatgatcccaatcaac |
31838782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 763 - 873
Target Start/End: Original strand, 26391821 - 26391927
Alignment:
| Q |
763 |
attactaatatcggttgttgtcattaccattaccacgcccttctataaacactttctctcccgaagaatacattggggttggacccagttattatcccct |
862 |
Q |
| |
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|||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||||| |||| |
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| T |
26391821 |
attactaatatcagtcgttgtcattaccattactacg-ccttctataaacactttctat-ccgaagaatacact-gggttggacccagttattat-ccct |
26391916 |
T |
|
| Q |
863 |
catcattagtt |
873 |
Q |
| |
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||||||||||| |
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| T |
26391917 |
catcattagtt |
26391927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 766 - 873
Target Start/End: Complemental strand, 47691926 - 47691823
Alignment:
| Q |
766 |
actaatatcggttgttgtcattaccattaccacgcccttctataaacactttctctcccgaagaatacattggggttggacccagttattatcccctcat |
865 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| | ||||| |
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| T |
47691926 |
actaatatcggtcgttgtcattaccattaccac-cccttctataaacactttctct-ccgaagaatacatt-gggttggacccagttgttat-ctctcat |
47691831 |
T |
|
| Q |
866 |
cattagtt |
873 |
Q |
| |
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|||||||| |
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| T |
47691830 |
cattagtt |
47691823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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