View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112R-Insertion-4 (Length: 765)
Name: NF3112R-Insertion-4
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 128 - 760
Target Start/End: Complemental strand, 43367016 - 43366391
Alignment:
| Q |
128 |
tgatgcatacaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttcttgccagtttcctccgccgtcgtctcattca |
227 |
Q |
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| T |
43367016 |
tgatgcataaaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttctttccagtttcctccgccgtcgtctcattca |
43366917 |
T |
|
| Q |
228 |
ccgcctcctcatttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
327 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366916 |
tcgcctcctcatttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
43366817 |
T |
|
| Q |
328 |
tctacttcaattacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
427 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366816 |
tctacttcaattacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
43366717 |
T |
|
| Q |
428 |
gcaatccccatttcacattccggtaatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttccttttgtttcttcga |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366716 |
gcaatccccatttcacattccggtaatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttccttttgtttcttcga |
43366620 |
T |
|
| Q |
528 |
atttgaagacaagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgcctgcagtaatgccggtgtcaactttgcaag |
627 |
Q |
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| T |
43366619 |
atttgaagacaagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgcctgcagttatgccggtgtcaactttgcaag |
43366520 |
T |
|
| Q |
628 |
taaacttcatcctagactcctagctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaa |
727 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366519 |
taaacttcatcctagactc----ctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaa |
43366424 |
T |
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| Q |
728 |
tagcaaaactcatccggaccgatacttgttaat |
760 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43366423 |
tagcaaaactcatccggaccgatacttgttaat |
43366391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 43367133 - 43367042
Alignment:
| Q |
8 |
acattacattactccatgcattacatattaatatcatcactagctaacacatatataca--------tacaccaaactgtaattaatattcattc |
94 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43367133 |
acattacattactccatgcattacatatta---tcatcactagctaacacatatatacatacatacatacaccaaactgtaattaatattcattc |
43367042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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