View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112R-Insertion-6 (Length: 430)
Name: NF3112R-Insertion-6
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112R-Insertion-6 |
 | |
|
| [»] chr7 (8 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 26805665 - 26805244
Alignment:
| Q |
9 |
atttgtacgtaaatgaaagaaaataagaaataagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26805665 |
atttgtacgtaaatgaaagaaaataagaaataagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaa |
26805566 |
T |
|
| Q |
109 |
gacacggcggtcacggaaggttaaaagagaacctttaactttgtagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26805565 |
gacacggcggtcacggaaggttaaaagagaaactttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatc |
26805466 |
T |
|
| Q |
209 |
acctttttgaccacagccaaatccaatggatatggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26805465 |
acctttttgaccacagccaaatccaatggatacggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatg |
26805366 |
T |
|
| Q |
309 |
gttgtggttgataaggataagccatgatgatagcgatgatatgaatgttatgttttgttatgaacttatgatagctctttaattttaatttgtctctgtg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26805365 |
gttgtggttgataaggataagccatgatgatagtgatgatatgaatgttatgttttgttatgaacttatgatagctctttaattttaatttgtctctgtg |
26805266 |
T |
|
| Q |
409 |
atgagtttagagtcttgtttgt |
430 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26805265 |
atgagtttagagtcttgtttgt |
26805244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 39 - 338
Target Start/End: Complemental strand, 26800533 - 26800234
Alignment:
| Q |
39 |
taagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagaga |
138 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||| | ||| | ||| |||| | | ||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26800533 |
taagagagagtaaaattgaagataccttgcgacgcaaggttgcgatggggtaaccagcggcatcaaccaagacacggcggtcacggagggttaagagaga |
26800434 |
T |
|
| Q |
139 |
acctttaactttgtagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatgga |
238 |
Q |
| |
|
|||||| |||||| | || || |||||||||||||| |||||| | |||||||| |||||||| | || |||||||| || ||||||||||||| ||| |
|
|
| T |
26800433 |
accttttactttgaacacgatgttgccgttgacatcagtgacggcaaagtttccatctgaaatggtcataacctttttcacgacagccaaatccaccgga |
26800334 |
T |
|
| Q |
239 |
tatggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatgatga |
338 |
Q |
| |
|
||||||||||||||||| | || ||||||| || || | ||||||||||||||||||| ||| || | ||||||||||||||||||||||| |||| |
|
|
| T |
26800333 |
tatggagcacaatattgctgtccgaatatggcagtggggtgtgccggcatcggcggtgcagaagcatattgctgtggttgataaggataagccataatga |
26800234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 26795741 - 26795512
Alignment:
| Q |
40 |
aagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaa |
139 |
Q |
| |
|
|||||||| ||| || ||| |||||| ||||| ||||||||||| |||||| | || ||||||| |||||||||||| ||||||| |||||| ||||| |
|
|
| T |
26795741 |
aagagagaataaagtggaacctaccttacgacggagggtggtgatggggttaccagcagcatcaagcaagacacggcgatcacggagggttaagagagag |
26795642 |
T |
|
| Q |
140 |
cctttaactttgtagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatggat |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || || ||||||||||||||||||| | ||||||||||| ||||| || | ||||| |||| |
|
|
| T |
26795641 |
cctttaactttgaagacaatattgccgttgacatcagtaacagcgaagtttccgtctgaaatggtcatcacctttttcaccacggcaagatccaccggat |
26795542 |
T |
|
| Q |
240 |
atggagcacaatattgagggccaaatatgg |
269 |
Q |
| |
|
| ||||||||||||||||| || ||||||| |
|
|
| T |
26795541 |
acggagcacaatattgaggaccgaatatgg |
26795512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 40 - 341
Target Start/End: Complemental strand, 26836331 - 26836036
Alignment:
| Q |
40 |
aagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaa |
139 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||| |||| |||||| | || |||||||||||||||||| ||||||| | ||| || | |||| |
|
|
| T |
26836331 |
aagagagaataaagttgaacataccttgcgacgtagggtgatgatggggttaccggccgcatcaaccaagacacggtggtcacgtatggtaaacacagaa |
26836232 |
T |
|
| Q |
140 |
cctttaactttgtagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatggat |
239 |
Q |
| |
|
|| ||||||||| | || || |||||||||||||| || ||| ||||| ||||| ||| | ||||||||||| ||||| || | |||| |||| |
|
|
| T |
26836231 |
cccttaactttgaaaactatgttgccgttgacatcagtaacggttaagtt---gtctgcaatggtcatcacctttttcaccaccgcgagttccaccggat |
26836135 |
T |
|
| Q |
240 |
atggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatgatgat |
339 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||| || || ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26836134 |
atggagtacaatattgagggcctattatggtggtggggagtggtggcat---cggtgcagaggaagaaggttgtggttgataaggataagccatgatgat |
26836038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 333
Target Start/End: Complemental strand, 26824293 - 26824166
Alignment:
| Q |
206 |
atcacctttttgaccacagccaaatccaatggatatggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcag |
305 |
Q |
| |
|
||||||||||| || || ||||||| || ||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26824293 |
atcacctttttcactacggccaaattcaccggatacggatcacaatattgagggcatattatggtggttggaagcaccggcatcggcggtgcagaggcag |
26824194 |
T |
|
| Q |
306 |
atggttgtggttgataaggataagccat |
333 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
26824193 |
atggttgtggttgacaaggataagccat |
26824166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 26789810 - 26789721
Alignment:
| Q |
61 |
taccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaacttt |
150 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
26789810 |
taccttgcgacgtagggtggtgatggggttaccggaggcatcaaccaagacacggcggtcacggagggttaagagagaacctttgacttt |
26789721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 26824134 - 26824087
Alignment:
| Q |
293 |
ggtgcagaggcagatggttgtggttgataaggataagccatgatgata |
340 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26824134 |
ggtgcagaggcagaaggttgtggttgataaggataagccatgatgata |
26824087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26795488 - 26795447
Alignment:
| Q |
293 |
ggtgcagaggcagatggttgtggttgataaggataagccatg |
334 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
26795488 |
ggtgcagaggcagatggctgtgctggataaggataagccatg |
26795447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University