View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112R-Insertion-7 (Length: 387)

Name: NF3112R-Insertion-7
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112R-Insertion-7
NF3112R-Insertion-7
[»] chr5 (1 HSPs)
chr5 (9-387)||(5171749-5172122)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 5172122 - 5171749
Alignment:
Q  9 attattgcgctatgagaggtggaagatccaagatgatataaggcctcatattttctgtattaagcttaaagctcatatttctcaccatagaaatctcgta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5172122 attattgcgctatgagaggtggaagatccaagatgatataaggcctcatattttctgtattaagcttaaagctcatatttctcaccatagaaatctcgta 5172023  T
Q  109 ggaccccttcatcattcctaacacaactgaattttacagattgaaacgtggctgttgtacccaacactaacagtttgttgttgtgtctatataaactgtg 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5172022 ggaccccttcatcattcctaacacagctgaattttacagattgaaacgtggctgttgtacccaacactaacagtttgttgttgtgtctatataacctgtg 5171923  T
Q  209 cttttatgttgggccctttgttacctctagcggaggcagttatgtactcagttggaaagataattgctctttaggcacttgctatttcaaccgcagttaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  5171922 cttttatgttgggccctttgttacctctagcggaggcagttatgtgctcagttgg-aagataattgctctttaggcacttgctatttcaacggcagttaa 5171824  T
Q  309 ctatcattcgttcgtttattcacagtagttaattgatgttcattcaatatcagcggcagttaactaccgttgtgttttg 387  Q
    ||||||    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5171823 ctatca----ttcgtttatttacagtatttaattgatgttcattcaatatcagcggcagttaactaccgctgtgttttg 5171749  T

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