View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112R-Insertion-8 (Length: 319)
Name: NF3112R-Insertion-8
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112R-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 32616445 - 32616126
Alignment:
| Q |
8 |
agttttgagactgcttcctctgcatctacagccttaccaaaatgagtctccctaactactttctctaactcggatcttgaaacatggttattgccatcgc |
107 |
Q |
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| T |
32616445 |
agttttgagactgcttcctctgcatctacagccttaccaaaatgagtctccctaactactttctctaactcggatcttgaaacatggttatcgccatcgc |
32616346 |
T |
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| Q |
108 |
catcaacttgctcaaataacctattgcatcacaaggagcaagaaaacactcataaaaaacatatttatatatactgtcatacgtgtaat--------taa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
32616345 |
catcaacttgctcaaataacctattgcatcacaaggagcaagaaaacactcataaaaaacatatttatatatattgtcatacgtgtaatcaaagatataa |
32616246 |
T |
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| Q |
200 |
atatgcagaccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccagaaata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32616245 |
atatgcagaccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccggaaata |
32616146 |
T |
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| Q |
300 |
agttgtcccttcaattcacg |
319 |
Q |
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| T |
32616145 |
agttgtcccttcaattcacg |
32616126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 319
Target Start/End: Complemental strand, 32634615 - 32634493
Alignment:
| Q |
197 |
taaatatgcagaccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccagaa |
296 |
Q |
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|||| ||| |||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
32634615 |
taaacatgtagaccttttgatagcatctttatcaggtgtaccgtcatctttgagcagcctaccaaccctatcactctgagcatgacttaagactccagaa |
32634516 |
T |
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| Q |
297 |
ataagttgtcccttcaattcacg |
319 |
Q |
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| T |
32634515 |
ataagatgttctttcaattcacg |
32634493 |
T |
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