View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112R-Insertion-9 (Length: 304)

Name: NF3112R-Insertion-9
Description: NF3112R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112R-Insertion-9
NF3112R-Insertion-9
[»] chr8 (1 HSPs)
chr8 (9-304)||(16390905-16391215)
[»] chr6 (10 HSPs)
chr6 (11-250)||(11707718-11707957)
chr6 (11-250)||(11665577-11665816)
chr6 (15-250)||(11620734-11620969)
chr6 (14-250)||(11629442-11629678)
chr6 (20-250)||(11671359-11671589)
chr6 (22-250)||(12090629-12090857)
chr6 (68-250)||(11758569-11758751)
chr6 (22-250)||(11737106-11737334)
chr6 (254-304)||(11620665-11620715)
chr6 (254-304)||(11707976-11708026)
[»] scaffold0019 (1 HSPs)
scaffold0019 (15-245)||(5949-6179)
[»] scaffold0196 (2 HSPs)
scaffold0196 (17-250)||(15245-15478)
scaffold0196 (254-304)||(15176-15226)
[»] chr1 (1 HSPs)
chr1 (23-247)||(44814020-44814244)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 16390905 - 16391215
Alignment:
Q  9 agaataaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16390905 agaataaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaacc 16391004  T
Q  109 attggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctc 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16391005 gttggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctc 16391104  T
Q  209 aaaagctcttattgtcactgctccagcaacagtttcagctactt---------------cttttgttgtgccagttatccgcatcacttcttttgctgag 293  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |                ||||||||||||||||||||||||||||||||||||||||    
T  16391105 aaaagttcttattgtcactgctccagaaacagtttcagctacatgatttgctacataggattttgttgtgccagttatccgcatcacttcttttgctgag 16391204  T
Q  294 gcaaagtagta 304  Q
    |||||||||||    
T  16391205 gcaaagtagta 16391215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 11707718 - 11707957
Alignment:
Q  11 aataaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccat 110  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  11707718 aataagcaaattctcaccagaggtgaaagtccctgatggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcaccaattgtttctaaccgt 11707817  T
Q  111 tggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaa 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11707818 tggatcaaccactcgtttgaggcaaaattatgaaaaaatgcactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaa 11707917  T
Q  211 aagctcttattgtcactgctccagcaacagtttcagctac 250  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  11707918 aagcccttattgtcactgctccggcaacagtttcagctac 11707957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 11665816 - 11665577
Alignment:
Q  11 aataaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccat 110  Q
    ||||| |||||||||||| ||  |||||||||| | |||||| |||||||||||||| |||| || |||||||| || ||||| |||||||||||||| |    
T  11665816 aataagcaaattctcaccggaactgaaagtccccgatggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtttctaaccgt 11665717  T
Q  111 tggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaa 210  Q
     ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||    
T  11665716 aggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatcttcctcctcaa 11665617  T
Q  211 aagctcttattgtcactgctccagcaacagtttcagctac 250  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11665616 aagctcttattgtcactgctccggcaacagtttcagctac 11665577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 11620969 - 11620734
Alignment:
Q  15 accaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattgga 114  Q
    |||||||||||||| |||| ||| || || || ||||| |||||||||||||||| ||||| ||| |||||| ||||||| | ||||||||| | |||||    
T  11620969 accaaattctcacctgaggggaatgttccgggaggaagcataaccatgcaaagtgttgcagcggcgagaacaactgcactgagtgtttctaatcgttgga 11620870  T
Q  115 tcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagc 214  Q
    ||||||| ||||||||||||||| |||||||||| | ||| |||||| | |||||||||||||| ||||||| |||  ||||||||||| ||||||||||    
T  11620869 tcaaccattcgtttgaggcaaaactatgaaaaaaagcacttgcattattatcaattagatcaaggttcttctcaaaagaacgatcttccccctcaaaagc 11620770  T
Q  215 tcttattgtcactgctccagcaacagtttcagctac 250  Q
     |||||||| || ||||||||||||||||| |||||    
T  11620769 ccttattgttacagctccagcaacagtttcggctac 11620734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 11629442 - 11629678
Alignment:
Q  14 aaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattgg 113  Q
    ||||||||||||||| |||||||| || || || ||||| ||||||||||||||||||||||  |  |||| | ||||||| ||||||||||||| ||||    
T  11629442 aaccaaattctcacctgaggtgaatgttccagggggaagcataaccatgcaaagtgctgcagcagtgagaagaactgcactgattgtttctaaccgttgg 11629541  T
Q  114 atcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaag 213  Q
    ||||||||||| || ||||||||| |||| ||||| | ||| |||||| | |||||||||||||| ||||||| |||  |||||||||||||||||||||    
T  11629542 atcaaccactcattcgaggcaaaactatggaaaaaagcacttgcattattatcaattagatcaaggttcttctcaaaagaacgatcttcctcctcaaaag 11629641  T
Q  214 ctcttattgtcactgctccagcaacagtttcagctac 250  Q
    | || |||||  | ||||| |||||||||||||||||    
T  11629642 ccctaattgttgcagctccggcaacagtttcagctac 11629678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 11671359 - 11671589
Alignment:
Q  20 attctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattggatcaac 119  Q
    ||||| ||| ||||||||||| || |  || || ||||| ||||||||||||||||  |  |||||  ||||||| ||||||||||||| ||||||||||    
T  11671359 attcttacctgaggtgaaagttccagagggtagcataactatgcaaagtgctgcagcagtgagaacgactgcactgattgtttctaaccgttggatcaac 11671458  T
Q  120 cactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagctctta 219  Q
    ||||| ||||| |||||| |||| ||||| | ||||||||| |  |||||||||  ||| ||||||| |||  || || | ||||||| |||||| ||||    
T  11671459 cactcatttgaagcaaaactatggaaaaaagcactagcatttaaatcaattagacaaaggttcttctcaaaagaatgagcctcctccttaaaagccctta 11671558  T
Q  220 ttgtcactgctccagcaacagtttcagctac 250  Q
    ||||||  |||||||||||||||||||||||    
T  11671559 ttgtcatagctccagcaacagtttcagctac 11671589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 12090629 - 12090857
Alignment:
Q  22 tctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattggatcaacca 121  Q
    |||||||||| |  |||||||||  |||||| ||| | ||| | ||||||||||||||||||||| | ||      |||||||| || |||||||| |||    
T  12090629 tctcaccagatgataaagtccctaatggaagcatagcgatggatagtgctgcagaggcaagaacaacggcgtacgctgtttctacccgttggatcagcca 12090728  T
Q  122 ctcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagctcttatt 221  Q
     || |||||||||||| |||| || || | | ||||||| |  ||||||| |||||||||||| |  || || |||||||| ||||||||||||||||||    
T  12090729 ttcatttgaggcaaaactatggaagaaagcagtagcattgacatcaattaaatcaagattcttgttgaaaaaccgatcttcttcctcaaaagctcttatt 12090828  T
Q  222 gtcactgctccagcaacagtttcagctac 250  Q
    ||||  |||||||||||||||||||||||    
T  12090829 gtcatagctccagcaacagtttcagctac 12090857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 250
Target Start/End: Complemental strand, 11758751 - 11758569
Alignment:
Q  68 tgctgcagaggcaagaacacctgcacttattgtttctaaccattggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtca 167  Q
    |||||||||||||||||||  ||||     ||||||||  | ||||||||||||||| ||||||| |||| | || || || | ||||||||| |  |||    
T  11758751 tgctgcagaggcaagaacaattgcatacgctgtttctactcgttggatcaaccactcatttgaggaaaaactgtggaagaaagcactagcattgacatca 11758652  T
Q  168 attagatcaagattcttctgaaagaaacgatcttcctcctcaaaagctcttattgtcactgctccagcaacagtttcagctac 250  Q
    |||| |||||||||||| |  || ||||| ||||| ||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  11758651 attaaatcaagattcttgttgaaaaaacggtcttcttcctcaaaagcccttattgtcattgctccagcagtagtttcagctac 11758569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 11737106 - 11737334
Alignment:
Q  22 tctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattggatcaacca 121  Q
    |||||||||| || ||||||||    ||||| ||| | ||||||||||| ||||| ||||||||| |||||     |||||||| || ||||||||||||    
T  11737106 tctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccgcagaagcaagaacaactgcatacgctgtttctacccgttggatcaacca 11737205  T
Q  122 ctcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagctcttatt 221  Q
    ||| ||||| |||||| | || || || | ||| ||||| |  ||||||| || ||||||||| |  || ||||||||||| ||||| ||||| ||||||    
T  11737206 ctcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttatt 11737305  T
Q  222 gtcactgctccagcaacagtttcagctac 250  Q
    || |  |||||||||||| ||||||||||    
T  11737306 gtaatagctccagcaacactttcagctac 11737334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 11620715 - 11620665
Alignment:
Q  254 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagta 304  Q
    ||||||||||||| | | |||||| | ||||||||||||||||||||||||    
T  11620715 ttttgttgtgccattcaaccgcattagttcttttgctgaggcaaagtagta 11620665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 11707976 - 11708026
Alignment:
Q  254 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagta 304  Q
    ||| ||||||||| |||||||||||||||||||||||| ||  ||||||||    
T  11707976 tttcgttgtgccacttatccgcatcacttcttttgctgcggtgaagtagta 11708026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 5949 - 6179
Alignment:
Q  15 accaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattgga 114  Q
    |||||||||||||| |||||||| || || || || || |||||||||||||||||| ||| || ||||||| ||||||| ||| ||||||||| |||||    
T  5949 accaaattctcacctgaggtgaatgttccaggagggagcataaccatgcaaagtgctccagtggtaagaacaactgcactgattatttctaaccgttgga 6048  T
Q  115 tcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagc 214  Q
    |||||||||| ||||||| |||| |||| ||||| | ||||||||| || |||||||| ||||| || |||| ||| |||| ||||||||||||||||||    
T  6049 tcaaccactcttttgaggaaaaactatggaaaaaagcactagcatttatatcaattaggtcaaggtttttctcaaaaaaacaatcttcctcctcaaaagc 6148  T
Q  215 tcttattgtcactgctccagcaacagtttca 245  Q
     ||||| ||  | ||||||||||||||||||    
T  6149 ccttatagttgcagctccagcaacagtttca 6179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 15478 - 15245
Alignment:
Q  17 caaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattggatc 116  Q
    |||||||||||| || ||||| || || || || || |||||||||||||||||||||| ||  ||||||  |||||| ||| ||||||||| |||||||    
T  15478 caaattctcacccgatgtgaatgttccaggagggagcataaccatgcaaagtgctgcagcggtgagaacaattgcactgattatttctaaccgttggatc 15379  T
Q  117 aaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagctc 216  Q
    |||||||| |||||||||| | |||| ||||| |||||||||||||  |||||||||| ||| ||||||| |||  |||||||||| ||||||||||| |    
T  15378 aaccactcatttgaggcaataatatggaaaaaagaactagcattaacatcaattagataaaggttcttctcaaaagaacgatcttcatcctcaaaagccc 15279  T
Q  217 ttattgtcactgctccagcaacagtttcagctac 250  Q
    |||||||  | ||||| ||||| |||||||||||    
T  15278 ttattgttgcagctcccgcaactgtttcagctac 15245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 15226 - 15176
Alignment:
Q  254 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagta 304  Q
    ||||||||| ||| |||||||||| |||||||||||| ||||||| |||||    
T  15226 ttttgttgtaccatttatccgcattacttcttttgctaaggcaaaatagta 15176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 44814244 - 44814020
Alignment:
Q  23 ctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccattggatcaaccac 122  Q
    ||||||||||| ||| || || |||||||||||||||||||||||||| || || ||||||||| ||||||| | ||||||||||| ||| |||||||||    
T  44814244 ctcaccagaggagaatgttccaggtggaagtataaccatgcaaagtgcagctgatgcaagaacaactgcactaactgtttctaaccgttgaatcaaccac 44814145  T
Q  123 tcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagctcttattg 222  Q
    || || | ||||||| ||||||| || | | ||||||| || ||||||| | ||||||||||   ||| |||||| ||||||  |||||||| |||||||    
T  44814144 tcattagcggcaaaactatgaaagaaaggagtagcattgatatcaattaaaccaagattctttacaaaaaaacgaccttcctgttcaaaagcccttattg 44814045  T
Q  223 tcactgctccagcaacagtttcagc 247  Q
    |||| || |||||||||| ||||||    
T  44814044 tcacggcaccagcaacagattcagc 44814020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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