View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112_high_18 (Length: 250)
Name: NF3112_high_18
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 51575516 - 51575309
Alignment:
| Q |
23 |
ccggctttgaatgtcgttttaatttacagtaattgagaatccaacatgctattatgtcgatgtgcaaacgaaactccaagaagtttgaaccatggacata |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51575516 |
ccggctttgaatgtcgttttaatttacagtaattgagaatccaacatgctattatgttgatgtgcaaac-----tccaagaagtttgaaccatggacata |
51575422 |
T |
|
| Q |
123 |
ttctacgctgtgcaaattccagtttatctaatgtgtctaataacggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcat |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51575421 |
ttctacgcggtgcaaattccagtttatctaacgtgtctaatagcggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcat |
51575322 |
T |
|
| Q |
223 |
gccttataatact |
235 |
Q |
| |
|
||||||||||||| |
|
|
| T |
51575321 |
gccttataatact |
51575309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 35454603 - 35454520
Alignment:
| Q |
138 |
attccagtttatctaatgtgtctaataacggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcat |
222 |
Q |
| |
|
||||||||||| ||||| | || ||||||||||| | ||||||||||||||||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
35454603 |
attccagtttacctaatatatc-aataacggtggattatcatttggtatggttgataagtctgctcatggagatatttcaagcat |
35454520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 1865535 - 1865625
Alignment:
| Q |
145 |
tttatctaatgtgtctaataacggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcatgccttataatact |
235 |
Q |
| |
|
||||||||| | || |||||| ||||| ||||||| |||||| ||||| ||||| || ||| ||||||||||| |||||||||||||| |
|
|
| T |
1865535 |
tttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatact |
1865625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University