View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112_high_6 (Length: 398)
Name: NF3112_high_6
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 43863087 - 43862714
Alignment:
| Q |
11 |
aatgagatgaagatattttatgatttgtaaacagttggaagtccaattattgagtaaatgcttaaatatattatacttatgaataattgggagtcagtca |
110 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
43863087 |
aatgatatgaagatattttatgttttgtaaacagttggaagtccaattattgagtaaatgcttaaatatattatacttatgaataattgg-agtaagtca |
43862989 |
T |
|
| Q |
111 |
ggatgtgcacggtccaataattttttacgtgtatcatccacaaccattactatgctctcaaatttcaatattcaattgagtgttaatttcgacttgttt- |
209 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862988 |
ggatatgcacgatccaataattttttacgtgtatcatccacaaccattactatgctctcaaatttcaatattcaattgagtgttaatttcgacttgttta |
43862889 |
T |
|
| Q |
210 |
nnnnnnntgttagtttcaattttcaacgataaatagtagacttagactactggttgtagtttccaacttcannnnnnnnnnnnnnnnnnnnnaacctaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
43862888 |
aaaaaaatgttagtttcaattttcaacgataaatagtagacttagactactagttgtagtttccaacttcatttttgttttgttgattttttaacctaac |
43862789 |
T |
|
| Q |
310 |
tttggtgatatgaggtttacatcgttcacgtacattctacatcagtcacttgtgcacattctaatggttgttaat |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862788 |
tttggtgatatgaggtttacatcgttcacgtacattctacatcagtcacttgtgcacattctaatggttgttaat |
43862714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University