View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_10 (Length: 351)
Name: NF3112_low_10
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 51575536 - 51575858
Alignment:
| Q |
31 |
attattgaaattgaactttgaatatcatgcttagaataataaaggagataacttcactactttcacgcctctagaacgataaatatgtattttgaatttt |
130 |
Q |
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| T |
51575536 |
attattgaaattgaactttgaatatcatgcttagaataataaaggagataacttcactactttcacgcctctagaacgataaatatgtattttgaatttt |
51575635 |
T |
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| Q |
131 |
caaaatgatagtaaaagttcagaaatgtctttaacttgaacatgtcacattata--ttagagttgcatttaagtgtgagaaaataagaagaatcttacta |
228 |
Q |
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| T |
51575636 |
caaaatgatagtaaaagttcagaaatgtctttaaattgaacatgtcacattatatattagagttgcatttaagtgtgagaaaataagaagaatcttacta |
51575735 |
T |
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| Q |
229 |
gcatggatatgtgatccattagaattttgtagtgatagaacaacatgatgatgaaatccattagagataggtagagatgcaactatggtttgttccgaga |
328 |
Q |
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| T |
51575736 |
gcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgatgaaatccattagagataggtagagatgcaactatggtttgttccgaga |
51575835 |
T |
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| Q |
329 |
ccattaattgcctttgcttctcc |
351 |
Q |
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| T |
51575836 |
ccgttaattgcctttgattctcc |
51575858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 1865021 - 1864855
Alignment:
| Q |
171 |
catgtcacattatattagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatagaaca |
270 |
Q |
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| T |
1865021 |
catgtcatattatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaaca |
1864922 |
T |
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| Q |
271 |
acatgatgatgaaatccattagagataggtagagatgcaactatggtttgttccgagaccattaatt |
337 |
Q |
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| T |
1864921 |
acgtgatactgaaatccgatagatgtaggaaatgatgaaacttttatttgttccgagtccattaatt |
1864855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 1865146 - 1865112
Alignment:
| Q |
39 |
aattgaactttgaatatcatgcttagaataataaa |
73 |
Q |
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| T |
1865146 |
aattgaactttgaatatcatacttagaataataaa |
1865112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 35449820 - 35449915
Alignment:
| Q |
217 |
agaatcttactagcatggatatgtgatccattagaattttgtagtgatagaacaacatgatgatgaaatccattagagataggtagagatgcaact |
312 |
Q |
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| T |
35449820 |
agaaacttactagcgggggtaggtgttccattagaagtgggtagcgatgaaacatcatgataatgaaatccattagaggtaggtagtgatgcaact |
35449915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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