View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_12 (Length: 328)
Name: NF3112_low_12
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_12 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 1900839 - 1900543
Alignment:
| Q |
34 |
tcgatcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatg |
133 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
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| T |
1900839 |
tcgatcttgcatggtagattcttgaagccccatttaccatatatcctgttaggaacccagaaccttacggagaaaataacacaacaacacttaataaatg |
1900740 |
T |
|
| Q |
134 |
gaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctccagtcctcctagataagagatgactctcta |
233 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1900739 |
gaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccagagctaagcttctccagtcctcctagataagagatgactctcta |
1900640 |
T |
|
| Q |
234 |
aagcccttccctctctcc--tttgctcaccctcaccgtcttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
328 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900639 |
aagcccttccctctctcctttttgctcaccctcaccgtcttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
1900543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 1910285 - 1909989
Alignment:
| Q |
34 |
tcgatcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatg |
133 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
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| T |
1910285 |
tcgatcttgcatggtagattcttgaagccccatttaccatatatcctgttaggaacccagaaccttacggagaaaataacacaacaacacttaataaatg |
1910186 |
T |
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| Q |
134 |
gaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctccagtcctcctagataagagatgactctcta |
233 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1910185 |
gaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccagagctaagcttctccagtcctcctagataagagatgactctcta |
1910086 |
T |
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| Q |
234 |
aagcccttccctctctcc--tttgctcaccctcaccgtcttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
328 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910085 |
aagcccttccctctctcctttttgctcaccctcaccgtcttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
1909989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 1893934 - 1893770
Alignment:
| Q |
37 |
atcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaa |
136 |
Q |
| |
|
||||| |||||||||||| || |||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||| |||| ||||||||||||| |
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| T |
1893934 |
atctttcatggtagattcacgatgccccatttacaatatagcctgtcagggacccagaacctaacggagaaaataacacagcaacacttaataaatggaa |
1893835 |
T |
|
| Q |
137 |
tctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcc |
201 |
Q |
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| ||| |||||||||||||||||||||| || |||||||||||| || |||||| ||||||| |
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| T |
1893834 |
tgtatcatttacgaaaaaggaaaattaccgttgaacggtactcctactgcccagagcaaagctcc |
1893770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 1903380 - 1903216
Alignment:
| Q |
37 |
atcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaa |
136 |
Q |
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||||| |||||||||||| || |||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||| |||| ||||||||||||| |
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| T |
1903380 |
atctttcatggtagattcacgatgccccatttacaatatagcctgtcagggacccagaacctaacggagaaaataacacagcaacacttaataaatggaa |
1903281 |
T |
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| Q |
137 |
tctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcc |
201 |
Q |
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| ||| |||||||||||||||||||||| || |||||||||||| || |||||| ||||||| |
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| T |
1903280 |
tgtatcatttacgaaaaaggaaaattaccgttgaacggtactcctactgcccagagcaaagctcc |
1903216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 2934446 - 2934605
Alignment:
| Q |
37 |
atcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaa |
136 |
Q |
| |
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|||||||||||||||||| ||| |||||||||| || || ||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||||| |
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| T |
2934446 |
atcttgcatggtagattcatgatgccccatttacaatgtagcctgttagggacctagaacctaacggagaaaataacacagcaac-------aaatggaa |
2934538 |
T |
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| Q |
137 |
tctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctc |
203 |
Q |
| |
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| ||||||||| |||||||||||||||| || |||||||||||| || ||||| ||||||||| |
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| T |
2934539 |
tgtattatttatgaaaaaggaaaattaccgttgaacggtactcctactgcccagaggaaagctcctc |
2934605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 2934713 - 2934771
Alignment:
| Q |
270 |
cttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
328 |
Q |
| |
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||||||||| || ||| ||||| |||||||||| ||||||||||| ||||||||||||| |
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| T |
2934713 |
cttattatttccctcttctttcctatgttttgagaacatcactctccatctaatgggct |
2934771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 1893663 - 1893605
Alignment:
| Q |
270 |
cttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
328 |
Q |
| |
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||||||||| || ||| ||||| |||||||||| ||||||||||| |||||| |||||| |
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| T |
1893663 |
cttattatttccctcttctttcctatgttttgagaacatcactctccatctattgggct |
1893605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 1903109 - 1903051
Alignment:
| Q |
270 |
cttattattaccttctcctttcatatgttttgataacatcactctgcatctaatgggct |
328 |
Q |
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||||||||| || ||| ||||| |||||||||| ||||||||||| |||||| |||||| |
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| T |
1903109 |
cttattatttccctcttctttcctatgttttgagaacatcactctccatctattgggct |
1903051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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