View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_15 (Length: 272)
Name: NF3112_low_15
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 49310527 - 49310270
Alignment:
| Q |
1 |
ttcttcctccgattcatctctctcatctaacggttacgatctcctcgtttctccaatcgtacggccaggggtccttttnnnnnnnnnnnnnttacgtaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49310527 |
ttcttcctccgattcatctctctcatctaacggttacgatctcctcgtttctccaatcgtacggccaggggtcctttttctctctct----ttacgtaag |
49310432 |
T |
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| Q |
101 |
ttgttacttcttcttcttctcatagtactccatttataacacacnnnnnnnnnnnnnnnnnnnnncttctcaataattaataatctctttttcattacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49310431 |
ttgttacttcttcttcttctcatagtactccatttataacacacttttatttttt----------cttctcaataattaataatctctttttcattacca |
49310342 |
T |
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| Q |
201 |
acgaatcatactctcgtacaacacacacgtacatagcctaatctattctactccatgtagtacgtcattttc |
272 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49310341 |
acgaattatactctcgtacaacacacacgtacatagcctaatctattctactccatgtagtacgtcattttc |
49310270 |
T |
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