View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112_low_16 (Length: 261)

Name: NF3112_low_16
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112_low_16
NF3112_low_16
[»] chr4 (2 HSPs)
chr4 (61-251)||(963146-963335)
chr4 (22-52)||(963026-963056)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 963146 - 963335
Alignment:
61 agtagtttcacagtttgatatatggactgatcaaggtaatatttgttccaaacaggttgcagaatatggagaagaaggagaagttgttggagtgataagg 160  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
963146 agtagtttcacagtttgatat-tggactaatcaatgtaatatttgttccaaacaggttgcagaatatgaagaagaaggagaagttgctggagtgataagg 963244  T
161 ggttgtgtgaaaacagttacaagagggaattcagcttatgtaaaactagcttatgttttaggacttagagtctctcccaaacacaggttct 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
963245 ggttgtgtgaaaacagttacaagagggaattcagcttatgtaaaactagcttatgttttaggacttagagtctctcccaaacacaggttct 963335  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 963026 - 963056
Alignment:
22 ctaatgcgacattatgttttagtgttgaata 52  Q
    |||||||||||||||||||||||||||||||    
963026 ctaatgcgacattatgttttagtgttgaata 963056  T

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