View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3112_low_21 (Length: 240)

Name: NF3112_low_21
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3112_low_21
NF3112_low_21
[»] chr8 (1 HSPs)
chr8 (4-219)||(16390905-16391120)
[»] chr6 (8 HSPs)
chr6 (4-217)||(11707718-11707931)
chr6 (4-217)||(11665603-11665816)
chr6 (5-213)||(11620761-11620969)
chr6 (5-214)||(11629442-11629651)
chr6 (4-208)||(11671359-11671563)
chr6 (4-206)||(12090629-12090831)
chr6 (5-206)||(11737106-11737307)
chr6 (4-160)||(11758595-11758751)
[»] scaffold0019 (1 HSPs)
scaffold0019 (8-213)||(5949-6154)
[»] scaffold0196 (1 HSPs)
scaffold0196 (5-211)||(15272-15478)
[»] chr1 (1 HSPs)
chr1 (4-205)||(44814043-44814244)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 16391120 - 16390905
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16391120 gacaataagaacttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 16391021  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16391020 gagtggttgatccaacggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 16390921  T
Q  204 agaatttggttattct 219  Q
    ||||||||||||||||    
T  16390920 agaatttggttattct 16390905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 11707931 - 11707718
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11707931 gacaataagggcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagtgcattttttcataattttgcctcaaac 11707832  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 203  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11707831 gagtggttgatccaacggttagaaacaattggtgcaggtgttcttgcctctgcagcactttgcatggttatacttccatcagggactttcacctctggtg 11707732  T
Q  204 agaatttggttatt 217  Q
    |||||||| |||||    
T  11707731 agaatttgcttatt 11707718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 11665603 - 11665816
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||     
T  11665603 gacaataagagcttttgaggaggaagatcgcttttttgagaagaatcttgatctaatagacattaatgctagtgcattttttcataattttgcctcaaat 11665702  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 203  Q
    ||||||||||||| | |||||||||||||| ||||| || |||||||| || |||| |||||||||||||| |||||| | ||||||||||  || ||||    
T  11665703 gagtggttgatcctacggttagaaacaataggtgcaagtcttcttgccactacagcgctttgcatggttatgcttccatcggggactttcagttccggtg 11665802  T
Q  204 agaatttggttatt 217  Q
    |||||||| |||||    
T  11665803 agaatttgcttatt 11665816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 11620761 - 11620969
Alignment:
Q  5 acaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaacg 104  Q
    |||||||| |||||||||| |||||||||||  ||| ||||||| |||||||||||||| | |||||| ||| | |||||||||| ||||||||||||||    
T  11620761 acaataagggcttttgagggggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgctttttttcatagttttgcctcaaacg 11620860  T
Q  105 agtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtga 204  Q
    | |||||||||||| | ||||||||| | ||||||| |||||| ||| ||||| |||||||||||||||| ||||| || || || ||| |||| |||||    
T  11620861 aatggttgatccaacgattagaaacactcagtgcagttgttctcgccgctgcaacactttgcatggttatgcttcctcccggaacattcccctcaggtga 11620960  T
Q  205 gaatttggt 213  Q
    |||||||||    
T  11620961 gaatttggt 11620969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 11629651 - 11629442
Alignment:
Q  5 acaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaacg 104  Q
    ||||| || ||||||||||||||||||||||  ||| ||||||| |||||||||||||| | |||||| ||| | ||||| |||| ||||||||| || |    
T  11629651 acaattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctcgaatg 11629552  T
Q  105 agtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtga 204  Q
    |||||||||||||| ||||||||||||| ||||||| | ||||  |  |||||||||||||||||||||| ||||| || || || |||||||| |||||    
T  11629551 agtggttgatccaacggttagaaacaatcagtgcagttcttctcactgctgcagcactttgcatggttatgcttccccctggaacattcacctcaggtga 11629452  T
Q  205 gaatttggtt 214  Q
    ||||||||||    
T  11629451 gaatttggtt 11629442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 11671563 - 11671359
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    ||||||||| |||||| ||||||| | || ||  ||| ||||||| |||  |||||||||  | ||||||||| | ||||| |||| |||||| |||||     
T  11671563 gacaataagggcttttaaggaggaggctcattcttttgagaagaacctttgtctaattgatttaaatgctagtgcttttttccatagttttgcttcaaat 11671464  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 203  Q
    ||||||||||||||| ||||||||||||| |||||||  |||||  |  |||||||||||||||| ||||| || ||  | || ||||||||||| |||     
T  11671463 gagtggttgatccaacggttagaaacaatcagtgcagtcgttctcactgctgcagcactttgcatagttatgctaccctctggaactttcacctcaggta 11671364  T
Q  204 agaat 208  Q
    |||||    
T  11671363 agaat 11671359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 12090831 - 12090629
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    ||||||||||||||||||||| |||||||| || ||  | |||||||||||| |||||||  | ||||||| | | || || |||| ||||||||||||     
T  12090831 gacaataagagcttttgaggaagaagatcggtttttcaacaagaatcttgatttaattgatgtcaatgctactgctttcttccatagttttgcctcaaat 12090732  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 203  Q
    || ||| |||||||| || ||||||||      || | ||||||||||||||||||||| | ||| | ||| ||||||  |||||||||  | |||||||    
T  12090731 gaatggctgatccaacgggtagaaacagcgtacgccgttgttcttgcctctgcagcactatccatcgctatgcttccattagggactttatcatctggtg 12090632  T
Q  204 aga 206  Q
    |||    
T  12090631 aga 12090629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 11737307 - 11737106
Alignment:
Q  5 acaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaacg 104  Q
    |||||||| ||||| ||||| ||||||||||| ||  | ||||||||| || |||||||  | ||||| ||| | || || || | |||||| ||||| |    
T  11737307 acaataagggctttcgaggaagaagatcgttttttcaacaagaatcttaatttaattgatgtcaatgcgagtgctttcttccacagttttgcatcaaatg 11737208  T
Q  105 agtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtga 204  Q
    |||||||||||||| || ||||||||     ||||| ||||||||| ||||| ||||||||||| | ||| |||||    |||||||| || ||||||||    
T  11737207 agtggttgatccaacgggtagaaacagcgtatgcagttgttcttgcttctgcggcactttgcattgctatgcttccttttgggactttaacatctggtga 11737108  T
Q  205 ga 206  Q
    ||    
T  11737107 ga 11737106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 11758595 - 11758751
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    ||||||||| ||||||||||| ||||| ||||| ||  | |||||||||||| |||||||  | ||||||||| | || || || | |||| |||||||     
T  11758595 gacaataagggcttttgaggaagaagaccgttttttcaacaagaatcttgatttaattgatgtcaatgctagtgctttcttccacagtttttcctcaaat 11758694  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagca 160  Q
    ||||||||||||||| |  ||||||||     ||||  |||||||||||||||||||    
T  11758695 gagtggttgatccaacgagtagaaacagcgtatgcaattgttcttgcctctgcagca 11758751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 6154 - 5949
Alignment:
Q  8 ataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaacgagt 107  Q
    ||||| |||||||||||||||||| |||| ||| |||| || ||||| |||||||| || ||||||||| | ||||| |||| |||| ||||||| ||||    
T  6154 ataagggcttttgaggaggaagattgtttttttgagaaaaaccttgacctaattgatataaatgctagtgcttttttccatagtttttcctcaaaagagt 6055  T
Q  108 ggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtgagaa 207  Q
    ||||||||||| ||||||||| ||| ||||||| ||||||| || ||| |||||||||||||||||| || || || || || |||||||| ||||||||    
T  6054 ggttgatccaacggttagaaataatcagtgcagttgttcttaccactggagcactttgcatggttatgctccctcctggaacattcacctcaggtgagaa 5955  T
Q  208 tttggt 213  Q
    ||||||    
T  5954 tttggt 5949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 15272 - 15478
Alignment:
Q  5 acaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaacg 104  Q
    |||||||| ||||||||||| ||||||||||  ||| ||||||| ||| ||||||||||  ||||||||||||| ||||| |||| | |||||||||| |    
T  15272 acaataagggcttttgaggatgaagatcgttcttttgagaagaacctttatctaattgatgttaatgctagttcttttttccatattattgcctcaaatg 15371  T
Q  105 agtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtga 204  Q
    |||||||||||||| ||||||||| ||| ||||||  ||||||  || |||||||||||||||||||||| || || || || || ||||| || |||||    
T  15372 agtggttgatccaacggttagaaataatcagtgcaattgttctcaccgctgcagcactttgcatggttatgctccctcctggaacattcacatcgggtga 15471  T
Q  205 gaatttg 211  Q
    |||||||    
T  15472 gaatttg 15478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 44814043 - 44814244
Alignment:
Q  4 gacaataagagcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctcaaac 103  Q
    ||||||||| ||||||||  |||||| |||||| |||   |||||||||| | ||||||| || ||||||| | | || ||||||| ||||||| | ||     
T  44814043 gacaataagggcttttgaacaggaaggtcgtttttttgtaaagaatcttggtttaattgatatcaatgctactcctttctttcatagttttgccgctaat 44814142  T
Q  104 gagtggttgatccaatggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctggtg 203  Q
    ||||||||||| ||| ||||||||||| | ||||||| ||||||||| || || |||||||||||||||||||||||||| || || ||| |||||||||    
T  44814143 gagtggttgattcaacggttagaaacagttagtgcagttgttcttgcatcagctgcactttgcatggttatacttccacctggaacattctcctctggtg 44814242  T
Q  204 ag 205  Q
    ||    
T  44814243 ag 44814244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University