View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_22 (Length: 239)
Name: NF3112_low_22
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 3723420 - 3723200
Alignment:
| Q |
18 |
acaagaggaggatattacatcaggttttttgaacatttaannnnnnnngccaatgttacaacaacttgtattttaaataagacatt-aaatatggtttta |
116 |
Q |
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| T |
3723420 |
acaagaagaggatattacatcaggttttttgaacatttaattttttttgccaatgttacaacaacttgtattttaaataagacatttaaatatggtttta |
3723321 |
T |
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| Q |
117 |
taatcagtatagtaaatcgatttaacaccagtgttaaatgtgtagaggcagatgtaaatgcaaaatacataacaatatttaacaccggaattgctagtaa |
216 |
Q |
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| T |
3723320 |
taatcagtatagtaaatcgatttaacaccagtgttaaatgtgtagaggcagatgtaaatgc--aatacataacaatatttaacaccggaattgctagtaa |
3723223 |
T |
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| Q |
217 |
aaaccaatgttaaatgttgaaat |
239 |
Q |
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|||||||| |||||||||||||| |
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| T |
3723222 |
aaaccaatattaaatgttgaaat |
3723200 |
T |
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