View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112_low_24 (Length: 227)
Name: NF3112_low_24
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_24 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8103394 - 8103620
Alignment:
| Q |
1 |
gatgaaggagtcgttgttgagttactcatgtttcaaagcatcaattccgtgatgttaatggtgcctctattatgcatcctttaactgtcacaattgaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
8103394 |
gatgaaggagtcgttgttgagttactcatgtttcaaagcatcaattccgtgatgttaatggtgcctctattatgcatccttcaactgtcacagttgaagc |
8103493 |
T |
|
| Q |
101 |
tcaaaatgatccagaaacatcattaattaacatctcgacgnnnnnnnagtcagactctgtttggataacataaaattaacggaacggaatgatgtggaat |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |||| || |||| ||||||||||||||||||||| ||| ||| || ||||||| |
|
|
| T |
8103494 |
tcaaaatgatccataaacatcattaattaacatcttgacgtttttttagtcggattctgcttggataacataaaattaacgaaacagaacgaagtggaat |
8103593 |
T |
|
| Q |
201 |
gaaacggagtggaacaaagattctatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8103594 |
gaaacggagtggaacaaagattctatt |
8103620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 8101931 - 8102034
Alignment:
| Q |
15 |
tgttgagttactcatgtttcaaagcatcaattccgtgatgttaatggtgcctctattatgcatcctttaactgtcacaattgaagctcaaaatgatccag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
8101931 |
tgttgagttactcatgtttcaaagcatcacttccgtgaagttaatggtgcctctattatgcatccttcaactgt--------aagctcaaagtgatccag |
8102022 |
T |
|
| Q |
115 |
aaacatcattaa |
126 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8102023 |
aaacatcattaa |
8102034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 4291954 - 4291990
Alignment:
| Q |
155 |
ctctgtttggataacataaaattaacggaacggaatg |
191 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
4291954 |
ctctgtttggataacctaaaattaacggagcggaatg |
4291990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University