View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3112_low_26 (Length: 220)
Name: NF3112_low_26
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_26 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33155425 - 33155644
Alignment:
| Q |
1 |
ggcctattgagctattattaatgccacaataagaagtataaaaatttaaaaccataaaactggctttacattatcaatacagtttgaatctgtatagacc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33155425 |
ggcctactgagctattattaatgccacaataagaagtataaaaatttaaaaccataaaattggctttacattatcaatacagtttgaatctgtatagacc |
33155524 |
T |
|
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33155525 |
ggctttgtttaacatgcacaagcaaaatggtcctgcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
33155624 |
T |
|
| Q |
201 |
tggtggaatttattgatcca |
220 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
33155625 |
tggtgggatttattgatcca |
33155644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 3769802 - 3769906
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||| | |||| |||||| |||||| || |||||||||||||||| |||||||||| ||||||| |||||| ||||| |||||||| || ||| |
|
|
| T |
3769802 |
ggctttgtctcacatacacaagtaaaatg-tcttgcaccatgcacaagtgttcttttcaccattggatcaacaagtcatatcatatctcatttgatctaa |
3769900 |
T |
|
| Q |
201 |
tggtgg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
3769901 |
tggtgg |
3769906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 31661002 - 31661112
Alignment:
| Q |
105 |
ttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggt |
204 |
Q |
| |
|
||||||||||| ||| |||||||||||| | ||||| | ||||| |||||||| || ||||||| || ||| || || |||||||||||||||| || |
|
|
| T |
31661002 |
ttgtttaacatccactagcaaaatggtcttgtaccatacgcaagtatctttttcatcagtggatcaataaatcatattatatctcatttaatttaatagt |
31661101 |
T |
|
| Q |
205 |
ggaatttattg |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
31661102 |
taaatttattg |
31661112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 2819087 - 2818991
Alignment:
| Q |
124 |
aaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatcca |
220 |
Q |
| |
|
||||||||| ||||||||||||| | |||||| || || ||||||| |||| ||||| | ||||||||| |||||||| ||||||||||||| |
|
|
| T |
2819087 |
aaaatggtcttgcaccatgcacaaacgtcttttttactattggatcaataagttgcatcatatttcatttaatctaatggtgagatttattgatcca |
2818991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34018061 - 34018280
Alignment:
| Q |
1 |
ggcctattgagctattattaatgccacaataagaagtataaaaatttaaaaccataaaactggctttacattatcaatacagtttgaatctgtatagacc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34018061 |
ggcctaatgagctattattaatgccacaataagaagtataaaaatttaaaaccataaaactggctttacattatcaatacagtttgaatctgtatagacc |
34018160 |
T |
|
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34018161 |
ggctttgtttaaaatgcacaaacaaaatggtccaacaccatgcacaagtaactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
34018260 |
T |
|
| Q |
201 |
tggtggaatttattgatcca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34018261 |
tggtggaatttattgatcca |
34018280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 6863203 - 6863083
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggat-caaaaagtcaaatcatttctcatttaattta |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||| ||| ||||||||| ||||| | |||||||||||| |
|
|
| T |
6863203 |
ggctttgtctaacatgcacaagcaaaatggtcttgcaccatgcacaagtgccttttccaccattagataaaaaaagtcacatcatatttcatttaattta |
6863104 |
T |
|
| Q |
200 |
atggtggaatttattgatcca |
220 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
6863103 |
atggtgagatttattgatcca |
6863083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 39785756 - 39785637
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||| ||| |||||||||||| | ||| | |||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
39785756 |
ggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcgccattagttcaaaaagtcatatcatttctcatttaatttaa |
39785657 |
T |
|
| Q |
201 |
tggtggaatttattgatcca |
220 |
Q |
| |
|
| |||| ||||||||||||| |
|
|
| T |
39785656 |
ttgtgggatttattgatcca |
39785637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 4472221 - 4472318
Alignment:
| Q |
103 |
ctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||||||| | ||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
4472221 |
ctttgtttaacatttacatgcaaaatggtcttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaa |
4472318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 34856551 - 34856448
Alignment:
| Q |
102 |
gctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaat |
201 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||| || |||| || ||| | ||||| | || ||||||||||| |
|
|
| T |
34856551 |
gctttgtctaacatgcacaagcaaaatagtcttgcaccatgcacaagtgtctttttcataattggataaagaagccgcatcatatttcttttaatttaat |
34856452 |
T |
|
| Q |
202 |
ggtg |
205 |
Q |
| |
|
|||| |
|
|
| T |
34856451 |
ggtg |
34856448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 5654673 - 5654734
Alignment:
| Q |
153 |
tttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttatt |
214 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
5654673 |
tttttcactattggatcaataagtcatatcatatctcatttaatttaatagtggaatttatt |
5654734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 46981316 - 46981430
Alignment:
| Q |
104 |
tttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatgg |
203 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||| | |||||||||| ||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
46981316 |
tttgtctaacatgcacaagctaaatggtcttgcaccatgcacaagtgccgttttcaccattggatcaaaaagtc--ataatttctcaattaatttaatgg |
46981413 |
T |
|
| Q |
204 |
tggaatttattgatcca |
220 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
46981414 |
tgtaaattattgatcca |
46981430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 7602822 - 7602938
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||||||||| || ||||||||| || ||||||| || ||| ||||| |||||||||||| || |
|
|
| T |
7602822 |
ggctttgtctaacatgcacaagtaaaatggttttgcaccatgcacaaatgtctttttcactattggatcaataa-tcacatcatatctcatttaattcaa |
7602920 |
T |
|
| Q |
201 |
tggtggaatttattgatcca |
220 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
7602921 |
--ggggaatttattgatcca |
7602938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 11457688 - 11457626
Alignment:
| Q |
152 |
ctttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttatt |
214 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
11457688 |
ctttttcaacattagatcaaaaagtcacatcacttctcatttaatttaatggtggaatttatt |
11457626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 26853081 - 26853181
Alignment:
| Q |
104 |
tttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatgg |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||| | || || |||||||||| | |||| || |||| | ||| | | ||||||| |||||||| |
|
|
| T |
26853081 |
tttgtttaacatgcacaagtaaaatggtcttgcatcatgaaaaaatgtctttttcaccgttggattaataagtaacatcttatatcatttagtttaatgg |
26853180 |
T |
|
| Q |
204 |
t |
204 |
Q |
| |
|
| |
|
|
| T |
26853181 |
t |
26853181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 40386458 - 40386340
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||| ||||||||| || ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||||||| || ||| ||||||||||||| |
|
|
| T |
40386458 |
ggctttgtctaacatgcaaaaacaaaaaggttttgcaccatgcacaagtgtcttttgcaccattggatc-aaaagtcacataattattcatttaatttaa |
40386360 |
T |
|
| Q |
201 |
tggtggaatttattgatcca |
220 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
40386359 |
tagtgagatttattgatcca |
40386340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 42347473 - 42347354
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||| | ||||| | |||||||||| |||| || ||||| ||||| |||||| |||||||| |
|
|
| T |
42347473 |
ggctttgtctaaattgcacaagcaaaatggtcttgcaccatgaataagtgtccttttcaccattggattaataagtcgcatcatatctcatataatttaa |
42347374 |
T |
|
| Q |
201 |
tggtggaatttattgatcca |
220 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
42347373 |
tgatgagatttattgatcca |
42347354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 35052626 - 35052546
Alignment:
| Q |
104 |
tttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcat |
184 |
Q |
| |
|
||||| |||||||||||||||||||| | ||| |||||||||||| ||||| |||||| |||||||||||||| ||||| |
|
|
| T |
35052626 |
tttgtctaacatgcacaagcaaaatgatattgcatcatgcacaagtgtcttttccaccattggatcaaaaagtcacatcat |
35052546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 20753348 - 20753230
Alignment:
| Q |
101 |
ggctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa |
200 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||| |||| || |||| || ||||| |||||| || ||||||||||| || || | |||||| |||||| |
|
|
| T |
20753348 |
ggctttgtcttacatgcacaagtaaaatggtcttccaccgtgtacaaatgtcttttccaccattggttcaaaaagtcacattatatttcatttcatttaa |
20753249 |
T |
|
| Q |
201 |
tggtggaatttattgatcc |
219 |
Q |
| |
|
| || |||||||||||| |
|
|
| T |
20753248 |
cgatgagatttattgatcc |
20753230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 8482495 - 8482382
Alignment:
| Q |
103 |
ctttgtttaacatgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatg |
202 |
Q |
| |
|
|||||| ||| ||| ||||| ||||||||| |||| ||||||||| | || | |||||| ||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
8482495 |
ctttgtctaatatggacaagaaaaatggtcttgcactatgcacaagcgtctgatccaccattagatcaaaaagtcatgtcatatttcatttaatttaatg |
8482396 |
T |
|
| Q |
203 |
gtggaatttattga |
216 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
8482395 |
gtgaaatttattga |
8482382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 43613790 - 43613685
Alignment:
| Q |
113 |
catgcacaagcaaaatggtccagcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaattta |
212 |
Q |
| |
|
||||||||| |||||||||| ||||||| | |||| |||||| | |||| |||||| |||||| |||| |||||||||||| |||||| ||||||| |
|
|
| T |
43613790 |
catgcacaaacaaaatggtcttacaccatgtataagtatcttttttatcatcagatcaataagtcatatcacgtctcatttaattaaatggttgaattta |
43613691 |
T |
|
| Q |
213 |
ttgatc |
218 |
Q |
| |
|
|||||| |
|
|
| T |
43613690 |
ttgatc |
43613685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 15785160 - 15785081
Alignment:
| Q |
140 |
atgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatcca |
220 |
Q |
| |
|
|||||||| | ||||||| | ||| ||| ||||||||| ||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
15785160 |
atgcacaaataacttttttatcatgagattaaaaagtcatatcctttctcatttaatttaatgg-agaaattattgatcca |
15785081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 7890488 - 7890422
Alignment:
| Q |
154 |
ttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatcca |
220 |
Q |
| |
|
||||||| ||| |||||| | |||| ||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
7890488 |
ttttcactatccgatcaatacgtcacatcatatttcatttaatttaatggtgaaatttattgatcca |
7890422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 39742621 - 39742569
Alignment:
| Q |
166 |
gatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatc |
218 |
Q |
| |
|
|||||| |||||| |||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
39742621 |
gatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatc |
39742569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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