View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_27 (Length: 210)
Name: NF3112_low_27
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 27897766 - 27897960
Alignment:
| Q |
16 |
atggacaaagttaattatgaataagtctattaaacaaagtgnnnnnnncgggaacaatattatcttgtacaagatacagaatcttacattgatcacaaac |
115 |
Q |
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| T |
27897766 |
atggacaaagttaattatgagtaagtctattaaactaagtgtttttttcgggaacaatattatcttgtacaagatagagaatcttacattgatcacaaac |
27897865 |
T |
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| Q |
116 |
acatggaagaatgtgttatgttgtcgaagatctcgttagaatctatggaagtgtcatgttgccgactgaacagaagagggtgtatctgcataagc |
210 |
Q |
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| T |
27897866 |
acatggaagaatgtgttatgttgtccaagatctcgtcagaatctatggaagtgtcatgttgccgactaaacggaagagggtgtatctgcacaagc |
27897960 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 36737293 - 36737338
Alignment:
| Q |
121 |
gaagaatgtgttatgttgtcgaagatctcgttagaatctatggaag |
166 |
Q |
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| T |
36737293 |
gaagaatgcgatatgttgttgaagatctcgctagaatctatggaag |
36737338 |
T |
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