View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_3 (Length: 544)
Name: NF3112_low_3
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 144 - 539
Target Start/End: Complemental strand, 43367016 - 43366624
Alignment:
| Q |
144 |
tgatgcatacaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttcttgccagtttcctccgccgtcgtctcattca |
243 |
Q |
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| T |
43367016 |
tgatgcataaaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttctttccagtttcctccgccgtcgtctcattca |
43366917 |
T |
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| Q |
244 |
ccgcctcctcatttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
343 |
Q |
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| T |
43366916 |
tcgcctcctcatttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
43366817 |
T |
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| Q |
344 |
tctacttcaattacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
443 |
Q |
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| T |
43366816 |
tctacttcaattacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
43366717 |
T |
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| Q |
444 |
gcaatccccatttcacattccggtaatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttccctttgcttct |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||| |
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| T |
43366716 |
gcaatccccatttcacattccggtaatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttccttttgtttct |
43366624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 43367133 - 43367042
Alignment:
| Q |
24 |
acattacattactccatgcattacatattaatatcatcactagctaacacatatataca--------tacaccaaactgtaattaatattcattc |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43367133 |
acattacattactccatgcattacatatta---tcatcactagctaacacatatatacatacatacatacaccaaactgtaattaatattcattc |
43367042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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