View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3112_low_6 (Length: 426)
Name: NF3112_low_6
Description: NF3112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3112_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 26805266 - 26805665
Alignment:
| Q |
11 |
cacagagacaaattaaaattaaagagctatcataagttcataacaaaacataacattcatatcatcgctatcatcatggcttatccttatcaaccacaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26805266 |
cacagagacaaattaaaattaaagagctatcataagttcataacaaaacataacattcatatcatcactatcatcatggcttatccttatcaaccacaac |
26805365 |
T |
|
| Q |
111 |
catctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccatatccattggatttggctgtggtcaaaaaggt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26805366 |
catctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccgtatccattggatttggctgtggtcaaaaaggt |
26805465 |
T |
|
| Q |
211 |
gatagcaatttcagacggaaacttcgtcgtcaccgatgtcaacggcaatattgtcttcaaagttaaaggttctcttttaaccttccgtgaccgccgtgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26805466 |
gatagcaatttcagacggaaacttcgtcgtcaccgatgtcaacggcaatattgtcttcaaagttaaagtttctcttttaaccttccgtgaccgccgtgtc |
26805565 |
T |
|
| Q |
311 |
ttggttgatgccgcagataaccctatcaccaccctacgtcgcaaggtaccttcaacgttaatctctcttatttcttattttctttcatttacgtacaaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26805566 |
ttggttgatgccgcagataaccctatcaccaccctacgtcgcaaggtaccttcaacgttaatctctcttatttcttattttctttcatttacgtacaaat |
26805665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 81 - 380
Target Start/End: Original strand, 26800234 - 26800533
Alignment:
| Q |
81 |
tcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccata |
180 |
Q |
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|||| ||||||||||||||||||||||| | || ||| ||||||||||||||||||| | || || ||||||| || | ||||||||||||||||| |
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| T |
26800234 |
tcattatggcttatccttatcaaccacagcaatatgcttctgcaccgccgatgccggcacaccccactgccatattcggacagcaatattgtgctccata |
26800333 |
T |
|
| Q |
181 |
tccattggatttggctgtggtcaaaaaggtgatagcaatttcagacggaaacttcgtcgtcaccgatgtcaacggcaatattgtcttcaaagttaaaggt |
280 |
Q |
| |
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||| ||||||||||||| || |||||||| || | |||||||| |||||||| | |||||| |||||||||||||| || || |||||||| |||||| |
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| T |
26800334 |
tccggtggatttggctgtcgtgaaaaaggttatgaccatttcagatggaaactttgccgtcactgatgtcaacggcaacatcgtgttcaaagtaaaaggt |
26800433 |
T |
|
| Q |
281 |
tctcttttaaccttccgtgaccgccgtgtcttggttgatgccgcagataaccctatcaccaccctacgtcgcaaggtaccttcaacgttaatctctctta |
380 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||| | | |||| ||| | ||| | |||||||||||| |||||| ||| ||||||||| |
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| T |
26800434 |
tctctcttaaccctccgtgaccgccgtgtcttggttgatgccgctggttaccccatcgcaaccttgcgtcgcaaggtatcttcaattttactctctctta |
26800533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 150 - 379
Target Start/End: Original strand, 26795512 - 26795741
Alignment:
| Q |
150 |
ccatatttggccctcaatattgtgctccatatccattggatttggctgtggtcaaaaaggtgatagcaatttcagacggaaacttcgtcgtcaccgatgt |
249 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||| ||||| | || ||||| ||||||||||| | ||||||||||||||||||| || || ||||| |
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| T |
26795512 |
ccatattcggtcctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgttactgatgt |
26795611 |
T |
|
| Q |
250 |
caacggcaatattgtcttcaaagttaaaggttctcttttaaccttccgtgaccgccgtgtcttggttgatgccgcagataaccctatcaccaccctacgt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||| ||||||| || | |||||| ||||||||||| ||| |
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| T |
26795612 |
caacggcaatattgtcttcaaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgctgctggtaaccccatcaccaccctccgt |
26795711 |
T |
|
| Q |
350 |
cgcaaggtaccttcaacgttaatctctctt |
379 |
Q |
| |
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|| |||||| ||| || ||| |||||||| |
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| T |
26795712 |
cgtaaggtaggttccactttattctctctt |
26795741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 379
Target Start/End: Original strand, 26836036 - 26836331
Alignment:
| Q |
78 |
ctatcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctcc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || || ||||||||| | ||||||||||||||| |||| |
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| T |
26836036 |
ctatcatcatggcttatccttatcaaccacaaccttcttcctctgcaccg---atgccaccactccccaccaccataataggccctcaatattgtactcc |
26836132 |
T |
|
| Q |
178 |
atatccattggatttggctgtggtcaaaaaggtgatagcaatttcagacggaaacttcgtcgtcaccgatgtcaacggcaatattgtcttcaaagttaaa |
277 |
Q |
| |
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|||||| |||| | || ||||| ||||||||||| | ||| ||||| ||||| ||| || |||||||||||||| || || ||||||||||| |
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| T |
26836133 |
atatccggtggaactcgcggtggtgaaaaaggtgatgaccattgcagac---aacttaaccgttactgatgtcaacggcaacatagttttcaaagttaag |
26836229 |
T |
|
| Q |
278 |
ggttctcttttaaccttccgtgaccgccgtgtcttggttgatgccgcagataaccctatcaccaccctacgtcgcaaggtaccttcaacgttaatctctc |
377 |
Q |
| |
|
|||||| | || ||| | ||||||| |||||||||||||||||| || | |||||| |||| ||||||||||||||||||| |||||| ||| |||||| |
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| T |
26836230 |
ggttctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccccatcatcaccctacgtcgcaaggtatgttcaactttattctctc |
26836329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 26824166 - 26824293
Alignment:
| Q |
86 |
atggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccatatccat |
185 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||| |
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| T |
26824166 |
atggcttatccttgtcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccataatatgccctcaatattgtgatccgtatccgg |
26824265 |
T |
|
| Q |
186 |
tggatttggctgtggtcaaaaaggtgat |
213 |
Q |
| |
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|| ||||||| || || ||||||||||| |
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| T |
26824266 |
tgaatttggccgtagtgaaaaaggtgat |
26824293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 26789721 - 26789810
Alignment:
| Q |
269 |
aaagttaaaggttctcttttaaccttccgtgaccgccgtgtcttggttgatgccgcagataaccctatcaccaccctacgtcgcaaggta |
358 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||| |
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| T |
26789721 |
aaagtcaaaggttctctcttaaccctccgtgaccgccgtgtcttggttgatgcctccggtaaccccatcaccaccctacgtcgcaaggta |
26789810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 26824087 - 26824134
Alignment:
| Q |
79 |
tatcatcatggcttatccttatcaaccacaaccatctgcctctgcacc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26824087 |
tatcatcatggcttatccttatcaaccacaaccttctgcctctgcacc |
26824134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 26795447 - 26795488
Alignment:
| Q |
85 |
catggcttatccttatcaaccacaaccatctgcctctgcacc |
126 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||||||||||| |
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|
| T |
26795447 |
catggcttatccttatccagcacagccatctgcctctgcacc |
26795488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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