View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3113_high_12 (Length: 238)
Name: NF3113_high_12
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 17693133 - 17693259
Alignment:
| Q |
1 |
cctttttcagctttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
100 |
Q |
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||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693133 |
cctttttcaactttgataactacttatatgtttattcagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
17693232 |
T |
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| Q |
101 |
atactcaatggacatcaccaaagcata |
127 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
17693233 |
atactcaatggacatcaccaaaccata |
17693259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 17626585 - 17626711
Alignment:
| Q |
1 |
cctttttcagctttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
100 |
Q |
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||||||||||||||||||| |||||||| || |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17626585 |
cctttttcagctttgataactacttatatgtctattcagttatgggactctaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
17626684 |
T |
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| Q |
101 |
atactcaatggacatcaccaaagcata |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
17626685 |
atactcaatggacatcaccaaagcata |
17626711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 17613400 - 17613526
Alignment:
| Q |
1 |
cctttttcagctttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
100 |
Q |
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||||||||| ||||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
17613400 |
cctttttcaactttgataactacttatatgtgtattcagttatgcgattctaaccaaccagttttgttctaggtgattctgtagtaaactactccacctg |
17613499 |
T |
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| Q |
101 |
atactcaatggacatcaccaaagcata |
127 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
17613500 |
atactcaatgggcatcaccaaagcata |
17613526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 17670981 - 17671107
Alignment:
| Q |
1 |
cctttttcagctttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
100 |
Q |
| |
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||||||||||||||||||| ||||| || || |||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17670981 |
cctttttcagctttgataactacttctatgtctattcagttatgggactcaaaccaaccagttttgttctaggtgattctgtaataaactattccacctg |
17671080 |
T |
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| Q |
101 |
atactcaatggacatcaccaaagcata |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
17671081 |
atactcaatggacatcaccaaagcata |
17671107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 17613628 - 17613689
Alignment:
| Q |
160 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagt |
221 |
Q |
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||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
17613628 |
gatgatggtgtctttacgccttaatttcagtgctaacggacatatatcacgcagaacctagt |
17613689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 17671209 - 17671270
Alignment:
| Q |
160 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagt |
221 |
Q |
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||||| ||||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |
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| T |
17671209 |
gatgatggtgtcttttcgccttagtttcagtgctaacggacatctatcatgcagaacctagt |
17671270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 17613540 - 17613569
Alignment:
| Q |
126 |
tatggtgcttgtgaagagtgacctaacctt |
155 |
Q |
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| T |
17613540 |
tatggtgcttgtgaagagtgacctaacctt |
17613569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 17626725 - 17626754
Alignment:
| Q |
126 |
tatggtgcttgtgaagagtgacctaacctt |
155 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17626725 |
tatggtgcttgtgaagagtgacctaacctt |
17626754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 17671121 - 17671150
Alignment:
| Q |
126 |
tatggtgcttgtgaagagtgacctaacctt |
155 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17671121 |
tatggtgcttgtgaagagtgacctaacctt |
17671150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 17693361 - 17693422
Alignment:
| Q |
160 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagt |
221 |
Q |
| |
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||||| |||||||||| |||||||||||| ||||||| | | | ||||||||||||| |||| |
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| T |
17693361 |
gatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagt |
17693422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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