View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3113_high_3 (Length: 467)
Name: NF3113_high_3
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 225 - 426
Target Start/End: Complemental strand, 34097868 - 34097670
Alignment:
| Q |
225 |
accaatgatttttgcacgttgtctcccatgtaaaacatcttgcataattaagcgagtcatgcacttcctcaagaaatcaaataaggtggcgtcatgtatt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097868 |
accaatgatttttgcacgttgtctcccatataaaacatcttgcataattaagcgagtcatgcacttcctcaagaaatcaaataaggtggcgtcatgtatt |
34097769 |
T |
|
| Q |
325 |
gcaccctgatcatgatgatagcgggtttaacttcttacgacactcctcgatttcttttttcagattgttgcaatgattcttgttccactgtaccaaattt |
424 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34097768 |
gcaccctgatca---tgatagcgggtttaacttcttacgacactcctcgatttcttttttcagattgttgcaatgattcttgttccattgtaccaaattt |
34097672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 34097952 - 34097873
Alignment:
| Q |
31 |
agttactggttcacgaacactatacttttactagcaaattttgttgaaatattgttatgcaatagtgcacatatctacat |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097952 |
agttactggttcacgaacactatccttttactagcaaattttgttgaaatattgttatgcaatagtgcacatatctacat |
34097873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University