View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3113_high_5 (Length: 399)
Name: NF3113_high_5
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 380
Target Start/End: Original strand, 30708207 - 30708581
Alignment:
| Q |
4 |
agatggacatcatcaggaaaaccatccagaaaataaaatgagaaataatgaactgaaagccaaaccctataaacagga---tttggtgaatacctttatg |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
30708207 |
agatgaacataatcaggaaaaccatccagaaaataaaatgagaaataatgaactgaaagccaaaccctataaacaggaggatttggtgaatacctttgtg |
30708306 |
T |
|
| Q |
101 |
ctgtgtaaacgaagacaataaaaatgatgtttttatttgagttaatccttatgctgggctgaaatccatttacattgaattttccatcaacagaaatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708307 |
ctgtgtaaacgaagacaataaaaatgatatttttattttagttaatccttatgctgggatgaaatccatttacattgaattttccatcaacagaaatagt |
30708406 |
T |
|
| Q |
201 |
ttttccaatgatgtgggaagcagctgagctggcaagcaaaggaaagtcaccaattaagatacgtcatccgtttctgctatccgttgtatcgttgttctag |
300 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30708407 |
ttgtccaatgatgtgggaagcagct-----ggcaagcaaaggaaagtcaccaattaagatacgtcatccgtttctgctatccgttgtatcggtgttctag |
30708501 |
T |
|
| Q |
301 |
ataatacttcctttacagactctaagttagaaatcaaccgtaatcggaagataaactctactggtgatcgcactgacatt |
380 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
30708502 |
ataatacttcatttacagactctaagttagcaatcaaccgtaatcggaagataaactctacaggtgatcacactgacatt |
30708581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 30705149 - 30705292
Alignment:
| Q |
162 |
aaatccatttacattgaattttccatcaacagaaatagtttttccaatgatgtgggaagcagctgagctggcaagcaaaggaaagtcaccaattaagata |
261 |
Q |
| |
|
|||||||||||| | ||| ||| ||||| |||| ||||| |||| |||||| ||||||||||| ||| |||||||||||||||||| ||| | |
|
|
| T |
30705149 |
aaatccatttacggtaaatcctccgtcaacggaaacagtttgtccagtgatgtaggaagcagctg-----gcaggcaaaggaaagtcaccaaggcagaca |
30705243 |
T |
|
| Q |
262 |
cgtcatccgtttctgctatccgttgtatcgttgttctagataatacttc |
310 |
Q |
| |
|
| |||| |||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
30705244 |
cttcatgtgtttctgctatccgttttatcggtgttcgagataatacttc |
30705292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 323
Target Start/End: Original strand, 30698820 - 30698987
Alignment:
| Q |
151 |
atgctgggctgaaatccatttacattgaattttccatcaacagaaatagtttttccaatgatgtgggaagcagctgagctggcaagcaaaggaaagtcac |
250 |
Q |
| |
|
|||||||| ||||||||||| || | ||| |||||||||||||||| || |||| |||||| |||||||||| ||| |||||||||| ||| |
|
|
| T |
30698820 |
atgctgggttgaaatccattcgcagtaaatcctccatcaacagaaataacttgtccagtgatgtaagaagcagctg-----gcagacaaaggaaagccac |
30698914 |
T |
|
| Q |
251 |
caattaagatacgtcatccgtttctgctatccgttgtatcgttgttctagataatacttcctttacagactct |
323 |
Q |
| |
|
||| |||| || |||| |||||||||||||||| ||||| ||||| ||||| |||||| || ||| ||||| |
|
|
| T |
30698915 |
caaggaagacacttcatgtgtttctgctatccgttttatcggtgttcgagatagtacttcattcacaaactct |
30698987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 309
Target Start/End: Original strand, 30717105 - 30717266
Alignment:
| Q |
143 |
taatccttatgctgggctgaaatccatttacattgaattttccatcaacagaaatagtttttccaatgatgtgggaagcagctgagctggcaagcaaagg |
242 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||| | ||| |||||||||||||| | | | ||| |||||| |||||| |||||||| ||||||| |
|
|
| T |
30717105 |
taatcctcatgctgggttgaaacccattcacagtaaatcctccatcaacagaaacaatctggccagtgatgtaggaagc-----agctggcaggcaaagg |
30717199 |
T |
|
| Q |
243 |
aaagtcaccaattaagatacgtcatccgtttctgctatccgttgtatcgttgttctagataatactt |
309 |
Q |
| |
|
||||||||||| |||| || |||| ||||||||||| || | ||| | ||||| ||||| ||||| |
|
|
| T |
30717200 |
aaagtcaccaaggaagacacttcatgtgtttctgctatacgctttattggtgttcgagatagtactt |
30717266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University