View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3113_high_7 (Length: 381)
Name: NF3113_high_7
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 21073686 - 21073482
Alignment:
| Q |
159 |
cactggttctgatgattttctggatttggatttgatatttggttctgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
258 |
Q |
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| T |
21073686 |
cactggttctgatgattttctggatttggatttgatatttggttttgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
21073587 |
T |
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| Q |
259 |
gattttgttcggtggtgatgacggcgatgctggtggcattcgtgctcgtagttgcgatcctggtgacagtcgtggtggtcatacttacaagctatgccat |
358 |
Q |
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| T |
21073586 |
gattttgttcggtggtgatgacggcgatactggtggcattcgtgctcgtagtcgcgatcctggtgacggtcgtggtggtcatacttac-agctatgccat |
21073488 |
T |
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| Q |
359 |
cgtgtt |
364 |
Q |
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|||||| |
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| T |
21073487 |
cgtgtt |
21073482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 21073972 - 21073810
Alignment:
| Q |
1 |
tcatcatatcttataaaactctgaaaattagcaacttcaaaatcttaagtaaaacttaattggactttaatctcccaggtatcannnnnnnnaatccaac |
100 |
Q |
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| T |
21073972 |
tcatcatatcttataaaactcataaaattagcaacgttaagatcttaaataaaacttaattggactttaatctcccaagtatcattttttttaatccaac |
21073873 |
T |
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| Q |
101 |
cgtcctctttctaatgcaacaaaataaacatgtgcattaaatggacttttcactgagacactg |
163 |
Q |
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| T |
21073872 |
catcctctttctaatgcaacaaaataaacatgtgcattaaatggacttttcactgagacactg |
21073810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 41569401 - 41569226
Alignment:
| Q |
159 |
cactggttctgatgattttctggatttggatttgatatttggttctgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
258 |
Q |
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||||||||| |||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||| || || |
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| T |
41569401 |
cactggttcagatgattttctggacttggatttgatatctggttccgatgacttcctagatgtggatttggtgactggatctgttgatttcttggacgac |
41569302 |
T |
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| Q |
259 |
gattttgttcggtggtgatgacggcgatgctggtggcattcgtgctcgtagttgcgatcctggtgacagtcgtggt |
334 |
Q |
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| T |
41569301 |
gcttctgttcggtggtgatgacggcggtgctggtgacggtcgtgctcgtagtcgcgatcctggtgacggtcatggt |
41569226 |
T |
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