View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3113_high_9 (Length: 260)
Name: NF3113_high_9
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 34354000 - 34354228
Alignment:
| Q |
19 |
gtcacgataatggagcttctcattttctacaatttgggtatgaaattagtggtgaaagatacataagagttagatttttcatttggccattgtgatcttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354000 |
gtcacgataatggagcttctcattttctacaatttgggtatgaaattagtggtgaaagatacacaagagttagatttttcatttggccattgtgatcttg |
34354099 |
T |
|
| Q |
119 |
gatatagaacgattcttaaggggtaagtggtggattatcaagaggtggaagcaaaagataaaatcagtgtttttggttcattttaagaaaggctaaagcc |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354100 |
gatatagaacgattcttaaggggtatgtggtggattatcaagacgtggaagcaaaagataaaatcagtgtttttggttcattttaagaaaggctaaagcc |
34354199 |
T |
|
| Q |
219 |
tcattttgaagtattttttattggtgttc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34354200 |
tcattttgaagtattttttattggtgttc |
34354228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University