View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3113_low_1 (Length: 579)
Name: NF3113_low_1
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 32845192 - 32844648
Alignment:
| Q |
18 |
gatgtcataccctcttgtgcattaaggttgttattgttgttgttgtggttgccttccccgtgtttggacatttggttgggaggtgaatcaaggtttgttc |
117 |
Q |
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| T |
32845192 |
gatgtcataccctcttgcacattaaggttgttattgttgttgttgtggttgccttccccgtgtttggacatttggttgggaggtgaatcaaggtctgttc |
32845093 |
T |
|
| Q |
118 |
gacaaacggggcatgtcttatgagattcaagccataggtcaatacattcttggtggaaaacatgacaacaaatggttaggagacgaagcatgctatcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845092 |
gacaaacggggcatgtcttatgagattcaagccataggtcaatacattcttggtggaaaacatgacaacaaatggttaggagacgaagcatgctatcatc |
32844993 |
T |
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| Q |
218 |
atcaaactctatcaagcaaatggcacattctaagctataactcttttccttgcgaaggtctttcacggaggagtagaggaaagtggggaatttttctaga |
317 |
Q |
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| T |
32844992 |
atcaaactctagcaagcaaatggcacattctaagctataactcttttccttacgaaggtctttcacggaggagtagaggaaagtggggaatttttctaga |
32844893 |
T |
|
| Q |
318 |
agggtattatcgagtcctctagggggtgacctatcaggtgagagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccag |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32844892 |
agggtattatcgagtcctctagagggtgacctatcaggtgagagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaagccag |
32844793 |
T |
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| Q |
418 |
caaaacaatacttgcaaacatacacgacgctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgt |
517 |
Q |
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| T |
32844792 |
caaaacaatacttgcaaacatacacaacgctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgt |
32844693 |
T |
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| Q |
518 |
tggggccggtggggtgtcgtacttaggctccgatgaagacattgg |
562 |
Q |
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| T |
32844692 |
tggggccggtggggtgtcgtacttaggctccgatgaagacattgg |
32844648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 21 - 561
Target Start/End: Complemental strand, 27745509 - 27744969
Alignment:
| Q |
21 |
gtcataccctcttgtgcattaaggttgttattgttgttgttgtggttgccttccccgtgtttggacatttggttgggaggtgaatcaaggtttgttcgac |
120 |
Q |
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|||||||||||||||||||||| |||||| ||| ||||||||| | | |||||||||||| ||| |||||||||||||| |||||| | ||||||| |
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| T |
27745509 |
gtcataccctcttgtgcattaacgttgttgttggtgttgttgttgcaacattccccgtgttttgacgtttggttgggaggtacatcaagatcggttcgac |
27745410 |
T |
|
| Q |
121 |
aaacggggcatgtcttatgagattcaagccataggtcaatacattcttggtggaaaacatgacaacaaatggttaggagacgaagcatgctatcatcatc |
220 |
Q |
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|||| || |||||||| ||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| || || |
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| T |
27745409 |
aaacaggacatgtcttgtgattttcaaaccataggtcgatacattcttggtggaaaacatggaaacaaatagttagaagacgaagcatgctatcgtcctc |
27745310 |
T |
|
| Q |
221 |
aaactctatcaagcaaatggcacattctaagctataactcttttccttgcgaaggtctttcacggaggagtagaggaaagtggggaatttttctagaagg |
320 |
Q |
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||||||| ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||| | || |||| |
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| T |
27745309 |
gaactctagcaagcaaatagcacattctaagctgtaacttttttccttgcggtggtctttcacatcagagtagaggaaagtggggaatccatttataagg |
27745210 |
T |
|
| Q |
321 |
gtattatcgagtcctctagggggtgacctatcaggtgagagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaa |
420 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| | ||||||| ||| |||| |
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| T |
27745209 |
gtattgttgagtcctctagggggtgacctatcaggtgagagacgaacgagggatcctgaggccgtgcgatgcaaggcccacatatggaaaatgcctgcaa |
27745110 |
T |
|
| Q |
421 |
aacaatacttgcaaacatacacgacgctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttgg |
520 |
Q |
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| T |
27745109 |
agcaatacttgcaaagatacacaatgctgaaagccacaaagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctgg |
27745010 |
T |
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| Q |
521 |
ggccggtggggtgtcgtacttaggctccgatgaagacattg |
561 |
Q |
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|||||||||| ||||||||||| || ||| ||||||||| |
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| T |
27745009 |
agccggtggggggtcgtacttagattctgataaagacattg |
27744969 |
T |
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