View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3113_low_13 (Length: 249)
Name: NF3113_low_13
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 17613418 - 17613193
Alignment:
| Q |
2 |
ttatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccnnnnnnn-gtggta |
100 |
Q |
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| T |
17613418 |
ttatcaaagttgaaaaaggttttattactgtgtgttgagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccaaaaaaaagtggta |
17613319 |
T |
|
| Q |
101 |
gaataacattagctt-taaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaatatttca |
199 |
Q |
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| T |
17613318 |
gaatatcattagcttataaaggataaaggaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaatatttca |
17613219 |
T |
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| Q |
200 |
atttcacctttagtccttgtaatttg |
225 |
Q |
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| T |
17613218 |
aattcacctttagtccttgtaatttg |
17613193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 17626603 - 17626378
Alignment:
| Q |
2 |
ttatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccnnnnnnn-gtggta |
100 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
17626603 |
ttatcaaagctgaaaaaggttttattactgtgtgtcgagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaaaagtggta |
17626504 |
T |
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| Q |
101 |
gaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgata--ctgatagatatccttaaatatttc |
198 |
Q |
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| T |
17626503 |
caatatcattagccataaaggataaagaaatgtattaactgaaatatcc-agaaggtatttaaatatcgtgataggcgcatagatatccttaaatatttc |
17626405 |
T |
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| Q |
199 |
aatttcacctttagtccttgtaatttg |
225 |
Q |
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|||||||||| ||||| |||||||||| |
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| T |
17626404 |
aatttcacctctagtctttgtaatttg |
17626378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 17670999 - 17670774
Alignment:
| Q |
2 |
ttatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccnnnnnnn-gtggta |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
17670999 |
ttatcaaagctgaaaaaggttttattactgtgtgtagagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaaaagtggta |
17670900 |
T |
|
| Q |
101 |
gaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgata--ctgatagatatccttaaatatttc |
198 |
Q |
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| || ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
17670899 |
cagtatcattagccataaaggataaagaaatgtataaactgaaatatcc-agaaggtatttaaatatcgtgataggcgcatagatatccttaaatatttc |
17670801 |
T |
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| Q |
199 |
aatttcacctttagtccttgtaatttg |
225 |
Q |
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|||||||||| ||||| |||||||||| |
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|
| T |
17670800 |
aatttcacctctagtctttgtaatttg |
17670774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 17692977 - 17692848
Alignment:
| Q |
95 |
gtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaata |
194 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17692977 |
gtggtagaatatcattagctataaaggataaagaaatgtattaactgaaatatca-agaaggtatttaaatatcgtgatagggatagatatccttaaata |
17692879 |
T |
|
| Q |
195 |
tttcaatttcacctttagtccttgtaatttg |
225 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17692878 |
tttcaatttcacctttagtccttgtaatttg |
17692848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 17693151 - 17693093
Alignment:
| Q |
2 |
ttatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtga |
60 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17693151 |
ttatcaaagttgaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtga |
17693093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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