View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3113_low_5 (Length: 465)
Name: NF3113_low_5
Description: NF3113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3113_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 41717135 - 41716704
Alignment:
| Q |
10 |
catcatcaaatgtgtgaaattgtgtaaaaaatacagtaaaataaaattaggggtaaatcaaccaagtgataacaccgagtgacgtagcagtggtgttgta |
109 |
Q |
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| T |
41717135 |
catcatcaaatgtgtgaaattgtgtaaaaaatacagtaaaataaaattaggggtaaatcaacc-------------gagtgacgtagcagtggtgttgta |
41717049 |
T |
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| Q |
110 |
gtcatggctaagaagagaga--atatatttattttccttttatttgttgaaagaaagatttgtaatcaagtgacacatagggctaactatgatttgataa |
207 |
Q |
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| T |
41717048 |
gtcatggctaagaagagagagaatatatttattttccttttatttgttgaaagaaagatttgtaatcaagtgacacatagggctaactatgatttgataa |
41716949 |
T |
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| Q |
208 |
tgacacgtagtgttactagattcgatgtttgaatgaaaatggggcacaatacagtggtactattactagtactagtgttagctaaaccagttaaatttct |
307 |
Q |
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| T |
41716948 |
tgacacgtagtgttactagattcgatgtttgaatgaaaatggggcacaatatagtggtactattactagtactagtgttagctaaaccagttaaatttct |
41716849 |
T |
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| Q |
308 |
tcaactgcccattactccaaaattccacatttggattatttgggtaggagccaggagggttggtttctaagtttcatctcattacgtgaggaaaaaatta |
407 |
Q |
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| T |
41716848 |
ccaactgcccattactccaaaattccacatttggcttatttgggtaggagccaggagggttggtttctaagtttcatctcattaggtgaggaaaaaatta |
41716749 |
T |
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| Q |
408 |
gggagcaaactagtttgttttgaaggccaa-ttttatggtgtaaa |
451 |
Q |
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| T |
41716748 |
gggagcaatctagtttgttttcaaggccaatttttatggtgtaaa |
41716704 |
T |
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