View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_100 (Length: 235)
Name: NF3114_high_100
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_100 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6372206 - 6371986
Alignment:
| Q |
1 |
cacaagtacatgatttcagcaatgatttacaggaaaagctaaaaactgaaaagctgaaaactttgttcaaaagaactaataagtgcagttaaaggaattg |
100 |
Q |
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| T |
6372206 |
cacaagtacatgatttcagcaatgatttacaggaaaagctaaaaa-tgaaaagctgaaaactttgttcaaaagaactaataagtgcagttaaaggaattg |
6372108 |
T |
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| Q |
101 |
taaaatgatnnnnnnnn--ttatgaacatgagatgaagtgcatgtactcaatagtcaacaccctaataaagaaaagtttcatttttctttcatttagaac |
198 |
Q |
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| T |
6372107 |
taaaatgataaaaaaaaaattatgaacatgagatgaagtgcatgtactcaatagtcaacaccctaataaagaaaagtttcatttttctttcatttagaac |
6372008 |
T |
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| Q |
199 |
aatggaaggaaagagaaagagc |
220 |
Q |
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| T |
6372007 |
aatggaaggaaagagaaagagc |
6371986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 6358327 - 6358279
Alignment:
| Q |
54 |
ctgaaaactttgttcaaaagaactaataagtgcagttaaaggaattgtaaaa |
105 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
6358327 |
ctgaaaactttcttcaaaagaactaa---gtgcagttaaaggaattgtaaaa |
6358279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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