View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_110 (Length: 219)
Name: NF3114_high_110
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_110 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 9586952 - 9587137
Alignment:
| Q |
18 |
aatatccttcaaaaatttagaattctctatccctacactcattctccaatcacagttagatacgatggtctcttcaagaagattacaatttttgaacaag |
117 |
Q |
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| T |
9586952 |
aatatccttcaaaaatttagaattctctatccctactctcattctccaatcacggttagatacgatggtctcttcaagaagattacaatttttgaacaag |
9587051 |
T |
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| Q |
118 |
tggaaaagcgattggttgttgaggtagccctgaccggagagattaattttgcggagtctgtaaagtgctaacgaaaggttctcaac |
203 |
Q |
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| T |
9587052 |
tggaaaagcgattggttgttgaggtagctctgaccagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctcaac |
9587137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 9581412 - 9581557
Alignment:
| Q |
52 |
acactcattctcc---aatcacagttagatacgatggtctcttcaagaagattacaatttttgaacaagtggaaaagcgattggttgttgaggtagccct |
148 |
Q |
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| T |
9581412 |
acactcattctcccaaaatcacagttagaaatgatagtctcttcaagaagattacaatttttgaacaagtggaaaagcaaatggttgttgaggtagtcat |
9581511 |
T |
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| Q |
149 |
gaccggagagattaattttgcggagtctgtaaagtgctaacgaaag |
194 |
Q |
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| T |
9581512 |
gacgagagagattaattttgcggagtctggaaaatgctaatgaaag |
9581557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 532590 - 532690
Alignment:
| Q |
94 |
agaagattacaatttttgaacaagtggaaaagcgattggttgttgaggtagccctgaccggagagattaattttgcggagtctgtaaagtgctaacgaaa |
193 |
Q |
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| T |
532590 |
agaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatgaaa |
532689 |
T |
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| Q |
194 |
g |
194 |
Q |
| |
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| |
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| T |
532690 |
g |
532690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 53761127 - 53761062
Alignment:
| Q |
66 |
atcacagttagatacgatggtctcttcaagaagattacaatttttgaacaagtggaaaagcgattg |
131 |
Q |
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| T |
53761127 |
atcacagttaaacaagatgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattg |
53761062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 513971 - 513925
Alignment:
| Q |
87 |
ctcttcaagaagattacaatttttgaacaagtggaaaagcgattggt |
133 |
Q |
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| T |
513971 |
ctcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt |
513925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 6588568 - 6588523
Alignment:
| Q |
94 |
agaagattacaatttttgaacaagtggaaaagcgattggttgttga |
139 |
Q |
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| T |
6588568 |
agaagcttacaattgttgaacaagtggaaaagcgattgattgttga |
6588523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 18314932 - 18314873
Alignment:
| Q |
85 |
gtctcttcaagaagattacaatttttgaacaagtggaaaagcgattggttgttgaggtag |
144 |
Q |
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|||||||| ||||| ||||| || ||||||||||||||||||||||| | ||||| |||| |
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| T |
18314932 |
gtctcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtag |
18314873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 32785341 - 32785308
Alignment:
| Q |
106 |
tttttgaacaagtggaaaagcgattggttgttga |
139 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
32785341 |
tttttgaacaagtggaaaagcgattgattgttga |
32785308 |
T |
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