View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_12 (Length: 499)
Name: NF3114_high_12
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 208 - 482
Target Start/End: Complemental strand, 10642707 - 10642434
Alignment:
| Q |
208 |
ccataaactaaacgaatcaaagacttaaacctcaagannnnnnnnnccttcataataagtataaaatccatcactctccatccagttcaataaacgtggc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642707 |
ccataaactaaacgaatcaaagacttaaacctcaagatttttttt-ccttcataataagtataaaatccatcactctccatccagttcaataaacgtggc |
10642609 |
T |
|
| Q |
308 |
aacgtagcgtaaaacatgtacaatttaatgtgaatcattataaaagtggcaatgcttgtgttaacaaaaagtagacaaactaggtcatagtgtagggata |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
10642608 |
aacgtagcgtaaaacatgtacaatttaatgtgaatcattataaaagtggcaatgcttgtgttaacaaaaagtagacaaactagatcacagtgtagggata |
10642509 |
T |
|
| Q |
408 |
aggtagattaacctctgacattcatgaactataatgaattcttatttgattaaaataatcatcttatattatatg |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10642508 |
aggtagattaacctctgacattcatgaactataatgaattcttatttgattaaaatattcatcttatattatatg |
10642434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 208 - 483
Target Start/End: Original strand, 32713131 - 32713396
Alignment:
| Q |
208 |
ccataaactaaacgaatcaaagacttaaacctcaagannnnnnnnnccttcataataagtataaaatccatcactctccatccagttcaataaacgtggc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32713131 |
ccataaactaaacgaatcaaagacttaaacctcaagatttttttt-ccttcataataagtataaaatccatcactctccatccagttcaataaacatggc |
32713229 |
T |
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| Q |
308 |
aacgtagcgtaaaacatgtacaatttaatgtgaatcattataaaagtggcaatgcttgtgttaacaaaaagtagacaaactaggtcatagtgtagggata |
407 |
Q |
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| T |
32713230 |
aacgtagcgtaaaa---------tttaatgtgaatcattataaaagtggcaatgcttgtattaacaaaaagtagacaaactagatcacagtgtaggaata |
32713320 |
T |
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| Q |
408 |
aggtagattaacctctgacattcatgaactataatgaattcttatttgattaaaataatcatcttatattatatgt |
483 |
Q |
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| T |
32713321 |
aggtagattaacctctgacattcatgaactataatgaattcttatttgatttaaataatcatcttatattatatgt |
32713396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10642914 - 10642749
Alignment:
| Q |
1 |
tacgtacaaacccaataggcttaaaatataaaaatagtacataaaagcaatcacacaactaagaaggatacaaacaagcacaagacacacgtggcccata |
100 |
Q |
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|
||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10642914 |
tacgtacaaacccaataggcttataatacaaaaatcgtacataaaagcaatcacacaactaagaaggatacacacaagcacaagacacacgtggcccata |
10642815 |
T |
|
| Q |
101 |
ccagaaatcatgttatcctcactaagcctaccttacatctcatttaaaaggatcaaactaacttag |
166 |
Q |
| |
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| T |
10642814 |
ccagaaatcatgttatcctcactaagcctaccttacatctcatttaaaaggatcaaactaacttag |
10642749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 32712924 - 32713089
Alignment:
| Q |
1 |
tacgtacaaacccaataggcttaaaatataaaaatagtacataaaagcaatcacacaactaagaaggatacaaacaagcacaagacacacgtggcccata |
100 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
32712924 |
tacgtacaaacccaataggcttataatacaaaaatagtacataaaagcaatcacacaactaagaaggatacacacaagcacaagacacacgtagcccata |
32713023 |
T |
|
| Q |
101 |
ccagaaatcatgttatcctcactaagcctaccttacatctcatttaaaaggatcaaactaacttag |
166 |
Q |
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| T |
32713024 |
ccagaaatcatgttatcctcactaagcctaccttacatctcatttaaaaggatcaaactaacttag |
32713089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 208 - 452
Target Start/End: Original strand, 23923942 - 23924185
Alignment:
| Q |
208 |
ccataaactaaacgaatcaaagacttaaacctcaagannnnnnnnnccttcataataagtataaaatccatcactctccatccagttcaataaacgtggc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923942 |
ccataaactaaacgaatcaaagacttaaacctcaagatttttttt-ccttcatattaagtataaaatccatcactctccatccagttcaataaacgtggc |
23924040 |
T |
|
| Q |
308 |
aacgtagcgtaaaacatgtacaatttaatgtgaatcattataaaagtggcaatgcttgtgttaacaaaaagtagacaaactaggtcatagtgtagggata |
407 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
23924041 |
aacgtagcgtaaaacatgtacaatttaatgtgaatcgttataaacgtggcaatgcttgtgttaacaaaaagtagacaaactagatcacagtgtagggata |
23924140 |
T |
|
| Q |
408 |
aggtagattaacctctgacattcatgaactataatgaattcttat |
452 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23924141 |
aggtagattaacttctgacattcatgaactataatgaattcttat |
23924185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 23923735 - 23923900
Alignment:
| Q |
1 |
tacgtacaaacccaataggcttaaaatataaaaatagtacataaaagcaatcacacaactaagaaggatacaaacaagcacaagacacacgtggcccata |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
23923735 |
tacgtacaaacccaatagacttataatacaaaaatagtacataaaagcaaccacacaactaagaaggatacacacaaacacaagacacacgtggcccata |
23923834 |
T |
|
| Q |
101 |
ccagaaatcatgttatcctcactaagcctaccttacatctcatttaaaaggatcaaactaacttag |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923835 |
ccagaaatcatgttatcctcactaagcctaccttacatctcatttaaaaggatcaaactaacttag |
23923900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 472
Target Start/End: Original strand, 43470269 - 43470384
Alignment:
| Q |
357 |
caatgcttgtgttaacaaaaagtagacaaactaggtcatagtgtagggataaggtagattaacctctgacattcatgaactataatgaattcttatttga |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
43470269 |
caatgcttgtgttaacaaaaagtagacaaattagatcacaatgttgggataaggtagattaacctctgacattcatgaaccataatgaattcttatctga |
43470368 |
T |
|
| Q |
457 |
ttaaaataatcatctt |
472 |
Q |
| |
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|||||| || |||||| |
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| T |
43470369 |
ttaaaagaaccatctt |
43470384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 43470124 - 43470183
Alignment:
| Q |
271 |
aaatccatcactctccatccagttcaataaacgtggcaacgtagcgtaaaacatgtacaa |
330 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||| |
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|
| T |
43470124 |
aaatccatcactctccttccagctcaataaacgtggcaacgtggcataaaacatgtacaa |
43470183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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