View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_high_14 (Length: 490)
Name: NF3114_high_14
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_14 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 45271744 - 45272217
Alignment:
| Q |
1 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
45271744 |
tatgccttagggtcagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttc |
45271843 |
T |
|
| Q |
101 |
tttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45271844 |
tttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagat |
45271943 |
T |
|
| Q |
201 |
aattacctttcccttcannnnnnnnacgcttataggagattattggagatccttgcagagttatgggatgatgatatggtttttataggttatcnnnnnn |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
45271944 |
aattacctttcccttcattttttttacgcttataggagattattggagatccttgcagagttatgggatgatggtatggtttttataggttatcaaaaaa |
45272043 |
T |
|
| Q |
301 |
ngtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggtacgtaatagtcgtaaacttctcggttgaaacactatctaccactat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45272044 |
agtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggtacgtaatagtcgtaaacttctcggttgaaacactatctaccactat |
45272143 |
T |
|
| Q |
401 |
tacagttaacattgtgatgagtagaaacaattctcattattgaaatgaatgtgctaagtgaattacaaagtggt |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45272144 |
tacagttaacattgtgatgagtagaaacaattctcattattgaaatcaatgtgctaagtgaattacaaagtggt |
45272217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 45275277 - 45275757
Alignment:
| Q |
1 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275277 |
tatgccttagggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttc |
45275376 |
T |
|
| Q |
101 |
tttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
45275377 |
tttgttgagtttgaacctcagggtctttaccatttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacggcggagat |
45275476 |
T |
|
| Q |
201 |
aattacctttcccttcannnnnnnnacgcttataggagattattggagatccttgcagagttatgggatgatgatatggtttttataggttatcnnnnnn |
300 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| |
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|
| T |
45275477 |
aattacctttcccttca-tttttttaggcttattggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaa |
45275575 |
T |
|
| Q |
301 |
ngtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggtacgtaatagtcgtaaacttctc-----------------ggttgaa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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|
| T |
45275576 |
agtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaa |
45275675 |
T |
|
| Q |
384 |
acactatctaccactattacagttaacattgtgatgagtagaaacaattctcattattgaaatgaatgtgctaagtgaattacaaagtggt |
474 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45275676 |
acactatctaccactattac---------tgttatgagtagaaaaaattctcattattgaaatgaatgtgctaattgaattacaaagtggt |
45275757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 45283518 - 45283730
Alignment:
| Q |
1 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45283518 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttc |
45283617 |
T |
|
| Q |
101 |
tttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45283618 |
tttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagat |
45283717 |
T |
|
| Q |
201 |
aattacctttccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45283718 |
aattacctttccc |
45283730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 45294906 - 45295122
Alignment:
| Q |
1 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| || |
|
|
| T |
45294906 |
tatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatc |
45295005 |
T |
|
| Q |
101 |
tttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagat |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||| || ||| || |||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
45295006 |
tttgttgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagat |
45295105 |
T |
|
| Q |
201 |
aattacctttcccttca |
217 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
45295106 |
aattacctttccattca |
45295122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 45303866 - 45304082
Alignment:
| Q |
1 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| || |
|
|
| T |
45303866 |
tatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatc |
45303965 |
T |
|
| Q |
101 |
tttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagat |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||| || ||| || |||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
45303966 |
tttgttgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagat |
45304065 |
T |
|
| Q |
201 |
aattacctttcccttca |
217 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
45304066 |
aattacctttccattca |
45304082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 45283814 - 45283955
Alignment:
| Q |
240 |
ttattggagatccttgcagagttatgggatgatgatatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatttggca-at |
338 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
45283814 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgt |
45283913 |
T |
|
| Q |
339 |
tttttagatgataggtacgtaatagtcgtaaacttctcggtt |
380 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
45283914 |
tttttagatgataggcacataattgtcgtaaacttctcggtt |
45283955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 45295193 - 45295333
Alignment:
| Q |
240 |
ttattggagatccttgcagagttatgggatgatgatatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatttggcaatt |
339 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45295193 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt |
45295292 |
T |
|
| Q |
340 |
ttttagatgataggtacgtaatagtcgtaaacttctcggtt |
380 |
Q |
| |
|
| ||| |||||||| || |||| |||| |||||| |||||| |
|
|
| T |
45295293 |
tgttaaatgataggcacataattgtcgaaaacttatcggtt |
45295333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 45304153 - 45304293
Alignment:
| Q |
240 |
ttattggagatccttgcagagttatgggatgatgatatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatttggcaatt |
339 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45304153 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt |
45304252 |
T |
|
| Q |
340 |
ttttagatgataggtacgtaatagtcgtaaacttctcggtt |
380 |
Q |
| |
|
| ||| |||||||| || |||| |||| |||||| |||||| |
|
|
| T |
45304253 |
tgttaaatgataggcacataattgtcgaaaacttatcggtt |
45304293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 7241266 - 7241337
Alignment:
| Q |
403 |
cagttaacattgtgatgagtagaaacaattctcattattgaaatgaatgtgctaagtgaattacaaagtggt |
474 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7241266 |
cagttaacactatgatgagtagaaacaattctcattattgaaatgaatgtgctaaatgaattacaaagtggt |
7241337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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